G28416


Basic Information

Item Value
gene id G28416
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42106867 ~ 42110075 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU35585
aactcatGGAAGTACAGTCAttcagaacattaaaaataaataaaataatcaaccTTGATGTTATTTGTTATCTGCTAAATTGTTAAAATCATGTCACGTCTACATACATGTTCCTGTACACAATGTACTACACACTCTAAATTGGCCTACATTAGACTGATGCTTACCTTTAGTGAAAAGTACCAAACATGAAATATGCTTAGGCTTTACTACAGACGAGATATCATACATTGAAATCTGAAAAATCATTCTACATTGTAAATGGGGGGAAATGTATAATGGTAACACTTTCAGTACGCTTCGGGTTTAGTACATCTTCCCTCACAAATGCTCACAAACGTTTTCCTCCTTTTCTAAGGAACTGTTTGCCAGTTCAGTAACTTGAAATTATTTTActgcttctttctttttgaagaCAAATATTCGAAACCACTACAAAcagattaaacaatattttttagaGTATTTTTTGAATCTGTGAATTGTGCTTATATACCCGCCTGGCCGGCATCAGTCACCTATAGGTGAAGGCTTTGCGCAATAATACGCAGTGCATGTTGTGCCGGTTTTATCCTTGTTTTTCGTATCagtttttatattgaaatgtacagaaagCCACCTAAATACGTCAGCTGACATAAAGGACAATATTTATCCGAAAAGGTTGTTATTTATAGTAATACGAGTTTTTGGTACAGAATGTTCATTAACTACATTATAACAATAAAGTGACGTTACAGTAACGCCAACGtaagttacatttatttaatgactCTGTAGTTGAAAGATAATACTTCCTAACCCCTCATTTGTCTGTTaatataaggaaaataaaaagatcatAGAAGTGAAATCTTTTAGAATGAAAAATACAGATGTGTTAGAATTGCATAGGTATGGGACACATCTGGAGCAACTAGGAATACCTTTTTGAAGGAACTGAATTGTGTGCTTTTGGACAACtttaagtcgccttggataagggcttctgctaagaaataaatcataaaagcaTCACAACCTATCACATATGAACTGACCGTAAGTGCATCAGCATTCATTTGTGTATTATAGTCTATTAGAAGTGTTTTGGTAGTTTTAGTGAAAAAGATTGAAACTATGTATTATTGTGAACAacagctgaaacaaacaaaacaaaacaactccCCAGAGGCCTGCAGAAGTATTGTAGTGATATTAGGGGAATGTCTTGGCAGGTGTAGTTTCGCCTGCAATGCATCACTTCTTTATAGGCGACCGGAGCCACCTTGCCATAATGGCGTGTGCCCTTCTTTTTGTATGAGATTGGTAGcccttaaaacaaaataaaaagtattttgacatCATAAGTCAATCATCATTTATTCGTCCTCGAACATCACGTTCTTTAAAGCAAGAGGACCATCCTAACAGTTGGAAAGGAGAATAAAATCTAAACACTTAAGGTTAAACAATTTAATCTTATTGTTTCATATTTCGCTATGAAATACAGTTCACATTGAGCTGTAGattcataatcaaaataaaccacatgCTTAGCTATAGTATCGTACCTATAGGTTTTTAGTGTATGatcagtatgtatgtatgtgtatatatatatatatatgagcgtgtgtatatttatctatctctataaaagtatttttattcagTGGATCATATCTAACTAACGTACATAACACCGCACCGTGCAGATATTGAGTGAATTTCTCCAGAGTCATACCAGAAACAGATTTGCAATTAGACTAAACATGAAATAGTGTGTTgataatattagtttttttgtttttcacattgcaATTTGAAATTGACCTTTCATTATTTGCTAATTTCATGCACTGCGACAGGTGGCgctgttttaatataaaatgcagcaGATGTTGCTTTCAACATTATGGAGCCTTCGCTTTGAActgcaatgcatttcaattaacGACATAGCCTATTTACAGAGGATTGTGTAAGATCCGCAGTGATTTTACACAATGGGTCGACATAACGAAGAATAAACCCCCAAATATTGTTGTTGGCAATATCTAATCACTTGAAACAGAACGCATTATTACCCGGCGAAAATGCATCTGGGAACATTACCTGGTTTAAAATGATATGAGATGTAATTAAACACTCATTTACATTATATGCGTATAAATATGCAACCGCGGAAGCGAACGAAGATTAATATTCACATGCATAATTGGCAAAGAAGACCAGAGACCAAATATGAACTTACAAATGTTGTCACCATTAAGAGTCTTAAGTGTATTGCTCATCAAGAATAATCATTATGTAATTCAATTATTCATAACGGATAATTACTACTATATTGCCTACATTGTTAACTTTAAGGCCTGTGTTCATACACAACATACAcgattttaattcaaaatgtcctGAATTGTGCTCCATTTTATATTGCATGACTCTTTTTAACCCGCTAGTCTACGAATGTATTTATGCAACTTTTATTTTACCGGACAAGGTCCTTGTATTGTGGAGAGACTGGGAGCAATATATTGTGCGTCCTAATTAACCTCTTAATGACTAGTCATACCAATTCACTTAATAGAGCATAAAAAGGAGAATATAGGAATATGACAAGGGCCTAAATAAAAACCGCATCCCAAGCGTCTTTTCATGGCATTTGGGCATATCTTATACGTTACATCAACATATAGTAACCACTAAAACCTTACAATGGTGTCTCATTTTCACCTTTACTTTAAACGACGGAACATATAGGCCTGTGTATAGAGTCTGCATGACTCTGCAACCGCTACAACTGATTTTTAAATACCGATTTAGTTTTGATCCATATACACGCACTGCACAGTTCATTCTGAGAGACCTTAGTGATGCAACTGTGTCAAACTCAATCTGTACATCTGAATCAGAAATGCAAAGCAGACACACGCGTGTGACCAGAAGTCCAGACACCAATGCACACAATTAGTGTCAATGGCATTATGGCGTTAGATTAAGCGGAGCAGACAAATGCAACCTAAACCCGAACCGAACCGGGACTCTATAGGAAAACTGATCTGAAGACCGACTACATATTGAGGCTTGTCAGCATCAACCAAGGCTGGCATTGCGTTTTCAGGTCTCACTCGATTATAAAATGCAGTTTGACGATCCCTGTTTGAAGTTTGGAGGTTCCTCTCTTGGCATTCACCGC

Function

NR:

description
LOW QUALITY PROTEIN: uncharacterized protein LOC110532142

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU35585 True 3181 lncRNA 0.36 2 42106867 42110075

Neighbor

gene id symbol gene type direction distance location
AMCG00008092 ythdf1,LOC108437571,LOC107668064,LOC107549989,LOC107549491,LOC107678560 coding upstream 6487 42091557 ~ 42100380 (+)
AMCG00008094 NA coding upstream 34694 42071749 ~ 42072173 (+)
AMCG00008093 LOC107724178,LOC107601334,LOC107696930,LOC108410586,LOC107594068 coding upstream 51474 42044804 ~ 42055393 (+)
AMCG00008087 zbtb46 coding upstream 185556 41916706 ~ 41921311 (+)
AMCG00008088 NA coding upstream 191336 41908543 ~ 41915531 (+)
AMCG00008097 bhlhe23,LOC102799046,LOC107737661,LOC107560898 coding downstream 102297 42212372 ~ 42213085 (+)
AMCG00008098 dnajc5aa,LOC107668106,LOC108412505,LOC103036084,LOC107090698 coding downstream 169694 42279769 ~ 42289436 (+)
AMCG00008099 NA coding downstream 180641 42290716 ~ 42300339 (+)
AMCG00008106 NA coding downstream 328268 42438343 ~ 42442423 (+)
AMCG00008105 NA coding downstream 334561 42444636 ~ 42448120 (+)
G28394 NA non-coding upstream 126783 41977259 ~ 41980084 (+)
G28332 NA non-coding upstream 170653 41846992 ~ 41936214 (+)
G28329 NA non-coding upstream 378434 41728212 ~ 41728433 (+)
G28327 NA non-coding upstream 411159 41695354 ~ 41695708 (+)
G28303 NA non-coding upstream 718083 41388583 ~ 41388784 (+)
G28421 NA non-coding downstream 7846 42117921 ~ 42186382 (+)
G28511 NA non-coding downstream 390599 42500674 ~ 42500981 (+)
G28527 NA non-coding downstream 474157 42584232 ~ 42586668 (+)
G28548 NA non-coding downstream 511875 42621950 ~ 42622157 (+)
G28637 NA non-coding downstream 998975 43109050 ~ 43120781 (+)
G28395 NA other upstream 113490 41992859 ~ 41993377 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 1385122 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 1859629 40241312 ~ 40247238 (+)
G27974 NA other upstream 2047481 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 2271915 39817027 ~ 39834952 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 303557 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 995638 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 1034730 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 1182521 43292596 ~ 43305530 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 2913073 45023148 ~ 45036416 (+)

Expression


Co-expression Network