G28421


Basic Information

Item Value
gene id G28421
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42117921 ~ 42186382 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU35590
CTAACCTGTGTGTAGAACCTGTTGTCGTATtttcatttgttacattttgatttagcTGTTTTGTATAAAGAGGAGTTCTGCTTGTTTTTCAGATCTCAAGAGGAGAGAGAACGCGTTGCAGGCTGACAGCTGAGAGGAATGGCAGGAGCGCTGACTGAGCCGAGGCCGAACCCCAATCAAAACCCTGCTGGCCACTTTGTTCCAGTCCAAGAGCTCTCCGAATCcgagcacaaaaaaaaaagaaataaccgCCTTGTAGGGAAAGGTagaaggagaggggagagggagaacgAGAGACAGATAGAAAAAGAGGGGTAGGGAGGCAGCCCCGTGGAAGGTCTATTGGGAGCACAGTGACCACCAGGTAATCAGCAGATGCGCTTATTCTCATTATGCTGCTAATTAATTCCCAACTCATTACACTTCCACTGGCTAATTTGTACTCGCCGCTTGATTTGATTAAACATGTCTCTATGCTAATGaatgtgttttctcttcattttacAGTTAGTTTGAAGCATGCTGGGTGTACAGtttgcgtgtgagtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35590 True 552 lncRNA 0.45 3 42117921 42186382

Neighbor

gene id symbol gene type direction distance location
AMCG00008092 ythdf1,LOC108437571,LOC107668064,LOC107549989,LOC107549491,LOC107678560 coding upstream 17541 42091557 ~ 42100380 (+)
AMCG00008094 NA coding upstream 45748 42071749 ~ 42072173 (+)
AMCG00008093 LOC107724178,LOC107601334,LOC107696930,LOC108410586,LOC107594068 coding upstream 62528 42044804 ~ 42055393 (+)
AMCG00008087 zbtb46 coding upstream 196610 41916706 ~ 41921311 (+)
AMCG00008088 NA coding upstream 202390 41908543 ~ 41915531 (+)
AMCG00008097 bhlhe23,LOC102799046,LOC107737661,LOC107560898 coding downstream 25990 42212372 ~ 42213085 (+)
AMCG00008098 dnajc5aa,LOC107668106,LOC108412505,LOC103036084,LOC107090698 coding downstream 93387 42279769 ~ 42289436 (+)
AMCG00008099 NA coding downstream 104334 42290716 ~ 42300339 (+)
AMCG00008106 NA coding downstream 251961 42438343 ~ 42442423 (+)
AMCG00008105 NA coding downstream 258254 42444636 ~ 42448120 (+)
G28416 NA non-coding upstream 7846 42106867 ~ 42110075 (+)
G28394 NA non-coding upstream 137837 41977259 ~ 41980084 (+)
G28332 NA non-coding upstream 181707 41846992 ~ 41936214 (+)
G28329 NA non-coding upstream 389488 41728212 ~ 41728433 (+)
G28327 NA non-coding upstream 422213 41695354 ~ 41695708 (+)
G28511 NA non-coding downstream 314292 42500674 ~ 42500981 (+)
G28527 NA non-coding downstream 397850 42584232 ~ 42586668 (+)
G28548 NA non-coding downstream 435568 42621950 ~ 42622157 (+)
G28637 NA non-coding downstream 922668 43109050 ~ 43120781 (+)
G28678 NA non-coding downstream 991420 43177802 ~ 43201203 (+)
G28395 NA other upstream 124544 41992859 ~ 41993377 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 1396176 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 1870683 40241312 ~ 40247238 (+)
G27974 NA other upstream 2058535 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 2282969 39817027 ~ 39834952 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 227250 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 919331 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 958423 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 1106214 43292596 ~ 43305530 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 2836766 45023148 ~ 45036416 (+)

Expression


Co-expression Network