G28511


Basic Information

Item Value
gene id G28511
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42500674 ~ 42500981 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU35705
gtccccacgtagtctcctctgttccagggtgaaaaggttcaggtcctcagtctctcagtaggacattcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcgatatctttcttgaagtgtggagcccagaactgtccacagtatccagatgagctctaactagtgcattgtacagtctgaacatcactgcccttgttctcaattctacacttttgacaatataccctaacattctgtttgccttttttattgcttccccacattgtttggatggagaaagtgagga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35705 True 308 lncRNA 0.46 1 42500674 42500981

Neighbor

gene id symbol gene type direction distance location
AMCG00008105 NA coding upstream 52554 42444636 ~ 42448120 (+)
AMCG00008106 NA coding upstream 58251 42438343 ~ 42442423 (+)
AMCG00008099 NA coding upstream 200335 42290716 ~ 42300339 (+)
AMCG00008098 dnajc5aa,LOC107668106,LOC108412505,LOC103036084,LOC107090698 coding upstream 211238 42279769 ~ 42289436 (+)
AMCG00008097 bhlhe23,LOC102799046,LOC107737661,LOC107560898 coding upstream 287589 42212372 ~ 42213085 (+)
AMCG00008107 NA coding downstream 8906 42509887 ~ 42520350 (+)
AMCG00008110 slc9a8 coding downstream 51416 42552397 ~ 42579983 (+)
AMCG00008109 NA coding downstream 155210 42656191 ~ 42657239 (+)
AMCG00008113 NA coding downstream 191045 42692026 ~ 42692859 (+)
AMCG00008111 NA coding downstream 204003 42704984 ~ 42713579 (+)
G28421 NA non-coding upstream 314292 42117921 ~ 42186382 (+)
G28416 NA non-coding upstream 390599 42106867 ~ 42110075 (+)
G28394 NA non-coding upstream 520590 41977259 ~ 41980084 (+)
G28332 NA non-coding upstream 564460 41846992 ~ 41936214 (+)
G28329 NA non-coding upstream 772241 41728212 ~ 41728433 (+)
G28527 NA non-coding downstream 83251 42584232 ~ 42586668 (+)
G28548 NA non-coding downstream 120969 42621950 ~ 42622157 (+)
G28637 NA non-coding downstream 608069 43109050 ~ 43120781 (+)
G28678 NA non-coding downstream 676821 43177802 ~ 43201203 (+)
G28862 NA non-coding downstream 1393128 43894109 ~ 43895951 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 63446 42413632 ~ 42437228 (+)
G28395 NA other upstream 507297 41992859 ~ 41993377 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 1778929 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 2253436 40241312 ~ 40247238 (+)
G27974 NA other upstream 2441288 40056632 ~ 40059386 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 604732 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 643824 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 791615 43292596 ~ 43305530 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 2522167 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 2646416 45147397 ~ 45171828 (+)

Expression


Co-expression Network