G28548


Basic Information

Item Value
gene id G28548
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42621950 ~ 42622157 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU35743
aatggcttcctcacagataaattctgcatggaaatactttgacaaagtgaatgaaaacactgttaagtgtataatatgtgcagtgcaattaaactaccacaaatctacaactggtatgttaacccacctaaaagccaaacaacCTTCTGCAAAACtgtaatgacagaaaaggaaaattcatattattaagctacatacacatatacat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35743 True 208 lncRNA 0.33 1 42621950 42622157

Neighbor

gene id symbol gene type direction distance location
AMCG00008110 slc9a8 coding upstream 41967 42552397 ~ 42579983 (+)
AMCG00008107 NA coding upstream 101600 42509887 ~ 42520350 (+)
AMCG00008105 NA coding upstream 173830 42444636 ~ 42448120 (+)
AMCG00008106 NA coding upstream 179527 42438343 ~ 42442423 (+)
AMCG00008099 NA coding upstream 321611 42290716 ~ 42300339 (+)
AMCG00008109 NA coding downstream 34034 42656191 ~ 42657239 (+)
AMCG00008113 NA coding downstream 69869 42692026 ~ 42692859 (+)
AMCG00008111 NA coding downstream 82827 42704984 ~ 42713579 (+)
AMCG00008115 mafba,LOC107680735,LOC107562627,LOC107703617,LOC105904296 coding downstream 139369 42761526 ~ 42762545 (+)
AMCG00008119 NA coding downstream 390351 43012508 ~ 43018451 (+)
G28527 NA non-coding upstream 35282 42584232 ~ 42586668 (+)
G28511 NA non-coding upstream 120969 42500674 ~ 42500981 (+)
G28421 NA non-coding upstream 435568 42117921 ~ 42186382 (+)
G28416 NA non-coding upstream 511875 42106867 ~ 42110075 (+)
G28394 NA non-coding upstream 641866 41977259 ~ 41980084 (+)
G28637 NA non-coding downstream 486893 43109050 ~ 43120781 (+)
G28678 NA non-coding downstream 555645 43177802 ~ 43201203 (+)
G28862 NA non-coding downstream 1271952 43894109 ~ 43895951 (+)
G28931 col9a3,LOC106571930 non-coding downstream 1431808 44053965 ~ 44056608 (+)
G28956 NA non-coding downstream 2069384 44691541 ~ 44749908 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 184722 42413632 ~ 42437228 (+)
G28395 NA other upstream 628573 41992859 ~ 41993377 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 1900205 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 2374712 40241312 ~ 40247238 (+)
G27974 NA other upstream 2562564 40056632 ~ 40059386 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 483556 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 522648 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 670439 43292596 ~ 43305530 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 2400991 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 2525240 45147397 ~ 45171828 (+)

Expression


Co-expression Network