G28581 (mafba,mafb,LOC107562627,LOC107713570,LOC106535696)


Basic Information

Item Value
gene id G28581
gene name mafba,mafb,LOC107562627,LOC107713570,LOC106535696
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42761004 ~ 42764654 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU35782
TTAATAAGCAAAATAGGAAACCATTTTTTCCAAAAACAACGAAAAATAAGACGAAAACAGAAACCAGCCTGAATGTAACTACAACAGTCCAAATTTAACTTTTTCGTTTATATAAACAGGATTGAAAATTGATCCCCTCgcaaaatacatgaaattaaaaaacaaaaacccgcTGCTGCAGTATAAGTTTGATTTCAACACAGTTGAATCAATAACAAACCAAAGATTGTTAAATGCATGACTCTTTTTAAcaatagtttttaaatgcaagcACCATGCTTTTCCATATGATCTGAcagtttgttaatttaaaatcattaaaataaaaaaaaaacttaactaTGCATCTGGCCAGCAGAACCAGAAactccaaataataataataaatcaatacaaaataataataaaatagaaacatacacatatatagttttcattttgaGATTTTGCAAAACCTGAatccttttttttaactggccggcagaaaaaaaatacaggaaaacatataacattaatcattgtaattttcttttcaaatgtacaCGTTAATtacaaaagaataattaaattgtaaataaaccccTGATATTTAGGCATGTTGCCATGCACATACAAAAAATGTCTTTGAATAAGTTTGAGATTAATCGGTCAAGTGGAAAGCTatgatttgttaaaataatttaggTTGAGAAGGCCTTTATTCCAAATGCATTAGTTTTGGGAAGTGAATACTTtttcttgagaaaaaataaCGTTCTAATATAGTCAGATTATATAATTTAGTAATGTCAAGTAGGCGGTACTCAATGCTATTTcttgaaaacatttataattaagtacaaaaaaaaatacacaggaatGCAGGTAGCAAACGgtttatctgtgtttattttaacgCAAACACAATCCAGATATAGAGGGATCGCAACTGCTTGGTGGAGTATCCCAGTATTTTACCAAATATACCAAATATCCTGCTGTATTCACAATGAAATAGCCTCAGTGGCCCATAGGATGTTCCTGTTATCattagcttttgtttttatgataatcagtgttgtttcaTTTATCACACCTCCtaacatgttattattatagtatgtCTTCCCTGAAGGCGGTCTGCAAAAAAACCCAAAATGAAAACTCATGATCCGAAAAAGTGCACTTAATATTAACAAAGTTGGTTGTCTTTAAtgcaaactgcaaaacaaaatgcccataactttcaaacttaaaaaacaaaacaaaaaaaagtcgaAGTTTAAAACCAGCCTCCTTAAAATGTCTTTGTGCAGTTTGATGTTGCATATATTTACAAGCTAAATAAACCCAAACATTATGAAAACTGCACAAGCAGTAATGTTGATATTGTGATCGTTTCATTTatataaccaaaacaaatgaaaagctcAGATCAACAACATGCTTTTaagataaacaagaaaaaagtacaaaatagaAATTATTACCATACATGTCCAGCATGCaggattaatattttaatgcagattttttttaatatatatatatttatatataaccaAGCAGGCAATAAACCAATGAGATGTTGCATAAAATGTTCCCCATTTGACAGTTTTAATTCGCAGGCGGGGTACATAAGAGAAAGAAAGTTTGCATATGTGaagtcttttttcatttctttttctttttgtcgtttttttgttttcctttctcgGGCAAGTGCATATGCAAGTCTTATAAAGTATTCTCCTTACTTAGAAGACGTCTGATATGACCTTTCTTAACATTCAAGAAGGAAACCACAGTAAGAAGAAAGTCCACTTTTTTTTCCATGCCCCTAGCAGATTAAAGCAATCTACAAAAAAGAAAGTTCGGATCTAGTACTTTTTTTGTgtcgtttgtttttgttttgagaagaaaaaatagtCTCGTCTCTACAAGCAACTAAGCTACAAAGATGCTGcaattgtaagaaaaaaaaaatctatttgctCTTTGTATTTCAGTTGTCACATGGATGGAGATGATTAGATATgagattattatttcttaatttcttctaTTAGTATAATCATTAATATTGATtctgatcattattattaatattgtcaGGATCAGCTGTCGCACTCACATGAAGAACTCTGGCGATGACGGGTTGTCACTAGTGGACCCTGCCTCTCGGAACCCGTTATTGCCCGTCAGTTTCTCGCATTTGAGTTTGTACGCGTCTCTTTCACGGGCCAGCCGGTTGATCTCTTGCTTGAGCTGCTCCACCTGGTTGATCAGCTGGGTCTTCTCGTTCTCCAGGACGTGTTTCTGCTGGACCCGCTTGTACCGGCACGACTGCGCGTAGCCCCGGTTCTTGAGGGTCCGGCGCTTCTGCTTCAGGCGGATCACTTCATCCTTGGTGAAACCCCGCAAGTGCCGGTTGAGCTCCCGCACGGACATGGACACCAGCTGCTCGTCTGAAAAGCGGTCCTCCACGTTGAGCCCCCCTCCTCCGCCGTGGTGGCCCTGCTGGGGGTGGTGGTGATGATGGTGGCGGTGGTGGAGCTGTTGGTGGGACCCGGGCGAGGTAGGAGACGGGCTGTCCGGGTCCTGGCTGTGATGGTGGTGATGCTGGCTGTGCACATGGCTGTGCGCCCCGGGGTGACCCGGGAGGTCTTCGGGATGATGGGGAAGCCCGCCGTACTGGTGATGGTGCTGCTGGGCATGCCCGTGGCTGTGATGGTGATGTGCTGGTCTGTAGCCGTCGAAGCCACCCTGCTGTAGCTGCTGCTGGACGTGTGGGGGTGGAGGGTGGCCGTGGGCCGTGGCACCGATCAGCGCTTCTACTGCGTCCTCCGGGGTCAGGTTCAACGCCTGGGGGTCCATCTGCTGGTGGTAGCCGCTGCTGGGCATCCAGTAAAGCTCTTCCAAGTGGTTCTTCTGCTCGGTGGGACTGAAGCTGGGCGAGGAAGGGACCGAGCTGCACGGGGTGCTGATTGGGGTGGAGGACACGGAGCCCTGCGGCTGGAGCCGGGTGCACTGCCGCACGGAGGAGCGGTCCAGCCCGGCTAGCGCTTCTTTCTTCACATCGAACTTCATCAAATCAAAGTCATTGACGTATTCCAATGCCAGCGGGCTGGTTGGCAGCTCTGGCCCCATGTTCAACTCTCCAGccatagtttgtttattttgtaaactagGCTTCTGTACTTCTGCCAACGTCGAAACCCCCCCGACTTTAGCTGTCCCGTCCGCTCTCCTGCAATAGTCTCTAACAGCCCTTCCACCGCTGCGGACGCGAGTTTTCTAACGTGCGACGCTCTTCGGCGATAACAAGGAGAAAAACTTTCTCTCTAATGCACTGCAAACAACATCAGTATCTGCGGTTGTTTCAAACCGGCCTCTGTAATGTTGTAGTCTGCCGAACAAGAGGTAGGAATGATTTGCCGTACATGCAAAAGTACGAAATGCAGTCTCTCTTCTTTTCCTGCAAACCAGCAGACATAGAAACCGTTGCGCCCCCTCCTCTTGCCGAGACGCGCTACTGTAAGTCCTTTGGCCGGATCGGAGGTGAGCAGGAAGACGGATTTTCGCTTTGAAAGCAGCTTTCCTTCTCTGCACCGCAGAGATTTCTGCCACCTTCCCAGACGCACTAACTCACTCCCGAGTCTCTCCAGTCTG

Function

symbol description
mafba Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including hindbrain development; lymphangiogenesis; and pronephric glomerulus development. Predicted to be active in nucleus. Is expressed in several structures, including hindbrain; hindbrain neural keel; neural plate; renal system; and vein. Human ortholog(s) of this gene implicated in Duane retraction syndrome and multicentric carpotarsal osteolysis syndrome. Orthologous to human MAFB (MAF bZIP transcription factor B).
mafb Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in blood; brain; kidney; and spleen. Human ortholog(s) of this gene implicated in Ayme-Gripp syndrome; cataract; and cataract 21 multiple types. Orthologous to human MAF (MAF bZIP transcription factor).

NR:

description
PREDICTED: transcription factor MafB

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35782 True 3651 TUCP 0.42 1 42761004 42764654

Neighbor

gene id symbol gene type direction distance location
AMCG00008112 NA coding downstream 56592 42698137 ~ 42704412 (-)
AMCG00008108 b4galt5 coding downstream 223163 42530081 ~ 42537841 (-)
AMCG00008103 NA coding downstream 406372 42331139 ~ 42354632 (-)
AMCG00008100 uckl1b,uckl1,LOC108411658,LOC107723126 coding downstream 430526 42310632 ~ 42330478 (-)
AMCG00008101 NA coding downstream 461671 42295442 ~ 42299333 (-)
AMCG00008114 NA coding upstream 339 42764993 ~ 42808108 (-)
AMCG00008118 dhx35,LOC102790768 coding upstream 250702 43015356 ~ 43028990 (-)
AMCG00008117 NA coding upstream 265202 43029856 ~ 43036431 (-)
AMCG00008122 clg20h20orf24,LOC105904298,LOC105926099,LOC104925093,LOC102790476 coding upstream 274744 43039398 ~ 43043630 (-)
AMCG00008125 plcg1 coding upstream 298180 43062834 ~ 43083682 (-)
G28532 NA non-coding downstream 166144 42522805 ~ 42594860 (-)
G28512 NA non-coding downstream 260008 42500677 ~ 42500996 (-)
G28509 NA non-coding downstream 284014 42475720 ~ 42476990 (-)
G28456 NA non-coding downstream 458907 42301277 ~ 42302097 (-)
G28446 NA non-coding downstream 470759 42283959 ~ 42290245 (-)
G28900 NA non-coding upstream 1098953 43863607 ~ 43893808 (-)
G28907 NA non-coding upstream 1129525 43894179 ~ 43895951 (-)
G28914 NA non-coding upstream 1231464 43996118 ~ 44000866 (-)
G28973 NA non-coding upstream 1722556 44487210 ~ 44487419 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding upstream 1901689 44666343 ~ 44666577 (-)
AMCG00008104 samd10 other downstream 359930 42359900 ~ 42401074 (-)
AMCG00008095 NA other downstream 671511 42083474 ~ 42089493 (-)
AMCG00008085 NA other downstream 911050 41846933 ~ 41849954 (-)
AMCG00008076 NA other downstream 1348780 41405791 ~ 41412224 (-)
AMCG00008069 rps21 other downstream 1559179 41199489 ~ 41201825 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other upstream 332457 43097111 ~ 43120164 (-)
AMCG00008144 phf20,LOC107727854 other upstream 746106 43510760 ~ 43583413 (-)
G28970 NA other upstream 1653220 44417874 ~ 44418196 (-)
AMCG00008192 NA other upstream 2384847 45149501 ~ 45228504 (-)
G29301 NA other upstream 3286041 46050695 ~ 46054346 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022097 mafba coding NC_007134.7 CM002907.2 3405665 ~ 3409140 (-)