G28636 (LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056)


Basic Information

Item Value
gene id G28636
gene name LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43105713 ~ 43108242 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU35844
CTCATTTTCTGCTTTGATTTTctgtttttcttctttagaCATCTGTTTCCTGGCCTCAGACTGGGCCTTGAAATAGTCATTCATCTCTGTGAAATTGCACTTATTTAGATCAGTGATAATTGACTTCTCCTCACTCGTCATTTCCTTCCGCCAGTCTTTGAAGAAGTTTTTCCGGAAGATGTCCTTGGTAGTGTATTCATGGTCCAACATTTTGCCGAAAAAGGTTGCCACTTCTTCTGCCTGGGGAGACAGCTTCATACACTTccCATCATAGTAAAACTTGACATTACCAGGAAGAGGTTCGTAAGGGGGTGCAAAGACGGGACCTTTGTGTTCGAGAAACTTCCACTTTACTCCGTCTGTGTATCTCTCCTCCTCCCACCATTTCCATTTCTCCTCAGGctctttctttgctttctttttgcCATCAGCAACAGCTCCTTTCTTGTCCTTAGTCTTCTTTTTGGGTTTGATGTCCTCATCATCCTCTTGTTTCCTCTTTTTGgccttcttttcattttccgTTTTGATTTTCTTGGGCTTTAAGTCATTT

Function

NR:

description
DNA topoisomerase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35844 True 553 TUCP 0.42 6 43105713 43108242

Neighbor

gene id symbol gene type direction distance location
AMCG00008116 NA coding upstream 50028 43052668 ~ 43055685 (+)
AMCG00008119 NA coding upstream 87262 43012508 ~ 43018451 (+)
AMCG00008115 mafba,LOC107680735,LOC107562627,LOC107703617,LOC105904296 coding upstream 343168 42761526 ~ 42762545 (+)
AMCG00008111 NA coding upstream 392134 42704984 ~ 42713579 (+)
AMCG00008113 NA coding upstream 412854 42692026 ~ 42692859 (+)
AMCG00008121 NA coding downstream 51327 43159569 ~ 43175126 (+)
AMCG00008127 NA coding downstream 110857 43219099 ~ 43223126 (+)
AMCG00008130 NA coding downstream 124068 43232310 ~ 43251526 (+)
AMCG00008128 NA coding downstream 144355 43252597 ~ 43259195 (+)
AMCG00008141 NA coding downstream 228699 43336941 ~ 43338038 (+)
G28548 NA non-coding upstream 483556 42621950 ~ 42622157 (+)
G28527 NA non-coding upstream 519045 42584232 ~ 42586668 (+)
G28511 NA non-coding upstream 604732 42500674 ~ 42500981 (+)
G28421 NA non-coding upstream 919331 42117921 ~ 42186382 (+)
G28416 NA non-coding upstream 995638 42106867 ~ 42110075 (+)
G28637 NA non-coding downstream 808 43109050 ~ 43120781 (+)
G28678 NA non-coding downstream 69560 43177802 ~ 43201203 (+)
G28862 NA non-coding downstream 785867 43894109 ~ 43895951 (+)
G28931 col9a3,LOC106571930 non-coding downstream 945723 44053965 ~ 44056608 (+)
G28956 NA non-coding downstream 1583299 44691541 ~ 44749908 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 668485 42413632 ~ 42437228 (+)
G28395 NA other upstream 1112336 41992859 ~ 41993377 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 2383968 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 2858475 40241312 ~ 40247238 (+)
G27974 NA other upstream 3046327 40056632 ~ 40059386 (+)
AMCG00008120 NA other downstream 36563 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 184354 43292596 ~ 43305530 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 1914906 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 2039155 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 2232332 45340574 ~ 45343914 (+)

Expression


Co-expression Network