G28678


Basic Information

Item Value
gene id G28678
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43177802 ~ 43201203 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU35900
CTTAGATATATTAAGTGAGCCATATACCTGGTAGGATGGAATGATGCACTTTGGAAAGTGATGAAACTGTGTAggggaaaacattttgttgtttgtttaatttgaaacaccAAGGTCAGTCTATAAACTGAGGTTATCAACGTTGTGAGGGATGCAAATAAGAAGACACGATTCAGGTTTCACCCTGAGTGTTTATTGATCTCTTCTCTGGTACCTGCAGTTCAGAATGGATGCTGGAACCCCATCCTTTATTTGCATAGGTCTCTACTGTTCATGGACTGGTATCCTTAGGGACGGAAACTTATTCAGAACATCACAAACCATGCAAGAGTGAAAGGCACATACACCATAGATATCAGATACATCATGATCATCAGTACACATGGGGATTgaactttccttttctttttctttcatattttcttgGATGGGGTGTGcggtgtggggtgtgggggaAGAGAATGTCTTATATactcacctaaaggattattaggaacacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35900 True 500 lncRNA 0.40 2 43177802 43201203

Neighbor

gene id symbol gene type direction distance location
AMCG00008121 NA coding upstream 2676 43159569 ~ 43175126 (+)
AMCG00008116 NA coding upstream 122117 43052668 ~ 43055685 (+)
AMCG00008119 NA coding upstream 159351 43012508 ~ 43018451 (+)
AMCG00008115 mafba,LOC107680735,LOC107562627,LOC107703617,LOC105904296 coding upstream 415257 42761526 ~ 42762545 (+)
AMCG00008111 NA coding upstream 464223 42704984 ~ 42713579 (+)
AMCG00008127 NA coding downstream 17896 43219099 ~ 43223126 (+)
AMCG00008130 NA coding downstream 31107 43232310 ~ 43251526 (+)
AMCG00008128 NA coding downstream 51394 43252597 ~ 43259195 (+)
AMCG00008141 NA coding downstream 135738 43336941 ~ 43338038 (+)
AMCG00008143 NA coding downstream 190901 43392104 ~ 43410731 (+)
G28637 NA non-coding upstream 57021 43109050 ~ 43120781 (+)
G28548 NA non-coding upstream 555645 42621950 ~ 42622157 (+)
G28527 NA non-coding upstream 591134 42584232 ~ 42586668 (+)
G28511 NA non-coding upstream 676821 42500674 ~ 42500981 (+)
G28421 NA non-coding upstream 991420 42117921 ~ 42186382 (+)
G28862 NA non-coding downstream 692906 43894109 ~ 43895951 (+)
G28931 col9a3,LOC106571930 non-coding downstream 852762 44053965 ~ 44056608 (+)
G28956 NA non-coding downstream 1490338 44691541 ~ 44749908 (+)
G28991 NA non-coding downstream 1567474 44768677 ~ 44816663 (+)
G28995 NA non-coding downstream 1594721 44795924 ~ 44798463 (+)
AMCG00008120 NA other upstream 21730 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 69560 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 740574 42413632 ~ 42437228 (+)
G28395 NA other upstream 1184425 41992859 ~ 41993377 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 2456057 40663972 ~ 40721745 (+)
AMCG00008132 NA other downstream 91393 43292596 ~ 43305530 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 1821945 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 1946194 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 2139371 45340574 ~ 45343914 (+)
G29183 NA other downstream 2239310 45440513 ~ 45441064 (+)

Expression


Co-expression Network