G28862


Basic Information

Item Value
gene id G28862
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43894109 ~ 43895951 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU36138
catcaatattaaCATCAAGAAccaagtaagaaaaaaaaaatgcaatagtaATTTACATCCTGAAATTATGACcccatatttttaattttctgtaattagtttttctttccattggACAAAGAATACAGAGCATAAAGgaacttttgcattttttttctgaagaattAAAAGCATTAGCACGGAACGTCCTGCAGGCTTCTCTGTATTTCACCGCATAAAGACTCTAAAAATATTTCCTCACTAGGctatttaatgaaataattaaaagcaacttCCTGTCCTTACCATCggtcaccaaaaaaaaaaaactaaacaaaaccccccaaaaaagtggCCTTTTGCAAATTTCTTCTAGGTCTTAAAAAGATAAGTCTAAAATTCTAATTTCATGTATACTTTTGAAGACAGATTTAACTGGCTACACGGTGTTTCATTTTACTctgctactttttttttttcttttctttttctccaccAGTCTCAATACTCTAGTGTGTAGAGGGAACTGACACGGGTCACATGACCAGAATCATTCTGAAGCTGCTGGTATCCAAACTGCACAGGGCGCCCCCTGTTGGCCGCACCcgaaaaacaaacccaaatcATAAACCATTACTGTTGCTGAAACCGATCCATTCTATACTGTAAGTAtgatacaatatacaaaagaaaatctataatacatattcatatgtatatatgtgtgtacatatacacatacatacatatatatacacacacacgtatatatgacacacatatatacataaatacactgtCAATGTCAGAAACTGCTCTAAGcactgagggaaaaaataaatctttggaTTGCGCATGTCTTACAAGGTAGATATTTTAAAGAGCATCGAGAATAATTAAAAGGgaggaaattaattttaaaataaaataaaaatcacacaaaagcaACCTTAATGCACACTGCCAAGGTacaagaataattaaatattacagacaacccccccacaccaccaccCCCCATTACCTCCTCACCTCCTGCTCGACTCATTCCCCACAAATCATTTCTCTCTGCCTAGTCTCAACACTACGGCCCATTACAGGGCTTTACATCACGCCTGCTTCCTGCACACACTGCTAGACAAGACTCCTGGCTCGCTATCTGCCCTGGTTCATTACAAACAGCCAAGGTAACCTAAAGGAGGGAtggggaggaaaagaaaaaaaaaacagccgcTGAAGGCCTTCTACACATGGGTGTCTTCTTTAatgcaacaaatacaaaaaatgttgaaaatgtatttggtgtTTCAACAGACTAGGGCACACGGTACTAACTTCTGGTAGTAGTTTTACAGACGTTGTGGGGAGCATGTGTGGAATGAAAACAGGGACTCACCGCTTCCTCACGTTGATAAACCATCTAAACACGGGGGACTGGCGCTTAGGAGACAACAGTGCTCTACTAAGAGAGCAGGGAAAGCGAACACATGCGGTCTGTGCTCGGCGCTCTTCTCGGCACTCTTCTCGGCACTCCTACTCAACCTGTCAGGCCACAAGCCTGAGGGACACCTTAGCAGTAGGATGAGCCACTTGTGTATTCAACACttgcagtgttttattaaaagatcTGATGATAAAATCAAAAACTGCAAACCCCCAACTCCCCAGCCGTGCCCACTCCCCCTCCGCTTTAGCATCAGAAATAAAAGTgcctaaaaattaaaaaaaataaagtgtctcACCGGTTgtctattaaaaaaattgtattcaaaTGTGACTTCAGAGTNN
>TU36139
GTCCACTGTCTGTATGACACACActatggaaaaaagaaagaccacacaaaaatatttaaatagaaatttgtatttacatcaatattaaCATCAAGAAccaagtaagaaaaaaaaaatgcaatagtaATTTACATCCTGAAATTATGACcccatatttttaattttctgtaattagtttttctttccattggACAAAGAATACAGAGCATAAAGgaacttttgcattttttttctgaagaattAAAAGCATTAGCACGGAACGTCCTGCAGGCTTCTCTGTATTTCACCGCATAAAGACTCTAAAAATATTTCCTCACTAGGctatttaatgaaataattaaaagcaacttCCTGTCCTTACCATCggtcaccaaaaaaaaaaaactaaacaaaaccccccaaaaaagtggCCTTTTGCAAATTTCTTCTAGGTCTTAAAAAGATAAGTCTAAAATTCTAATTTCATGTATACTTTTGAAGACAGATTTAACTGGCTACACGGTGTTTCATTTTACTctgctactttttttttttcttttctttttctccaccAGTCTCAATACTCTAGTGTGTAGAGGGAACTGACACGGGTCACATGACCAGAATCATTCTGAAGCTGCTGGTATCCAAACTGCACAGGGCGCCCCCTGTTGGCCGCACCcgaaaaacaaacccaaatcATAAACCATTACTGTTGCTGAAACCGATCCATTCTATACTGTAAGTAtgatacaatatacaaaagaaaatctataatacatattcatatgtatatatgtgtgtacatatacacatacatacatatatatacacacacacgtatatatgacacacatatatacataaatacactgtCAATGTCAGAAACTGCTCTAAGcactgagggaaaaaataaatctttggaTTGCGCATGTCTTACAAGGTAGATATTTTAAAGAGCATCGAGAATAATTAAAAGGgaggaaattaattttaaaataaaataaaaatcacacaaaagcaACCTTAATGCACACTGCCAAGGTacaagaataattaaatattacagacaacccccccacaccaccaccCCCCATTACCTCCTCACCTCCTGCTCGACTCATTCCCCACAAATCATTTCTCTCTGCCTAGTCTCAACACTACGGCCCATTACAGGGCTTTACATCACGCCTGCTTCCTGCACACACTGCTAGACAAGACTCCTGGCTCGCTATCTGCCCTGGTTCATTACAAACAGCCAAGGTAACCTAAAGGAGGGAtggggaggaaaagaaaaaaaaaacagccgcTGAAGGCCTTCTACACATGGGTGTCTTCTTTAatgcaacaaatacaaaaaatgttgaaaatgtatttggtgtTTCAACAGACTAGGGCACACGGTACTAACTTCTGGTAGTAGTTTTACAGACGTTGTGGGGAGCATGTGTGGAATGAAAACAGGGACTCACCGCTTCCTCACGTTGATAAACCATCTAAACACGGGGGACTGGCGCTTAGGAGACAACAGTGCTCTACTAAGAGAGCAGGGAAAGCGAACACATGCGGTCTGTGCTCGGCGCTCTTCTCGGCACTCTTCTCGGCACTCCTACTCAACCTGTCAGGCCACAAGCCTGAGGGACACCTTAGCAGTAGGATGAGCCACTTGTGTATTCAACACttgcagtgttttattaaaagatcTGATGATAAAATCAAAAACTGCAAACCCCCAACTCCCCAGCCGTGCCCACTCCCCCTCCGCTTTAGCATCAGAAATAAAAGTgcctaaaaattaaaaaaaataaagtgtctcACCGGTTgtctattaaaaaaattgtattcaaaTGTGACTTCAGAGTNN
>TU36140
catcaatattaaCATCAAGAAccaagtaagaaaaaaaaaatgcaatagtaATTTACATCCTGAAATTATGACcccatatttttaattttctgtaattagtttttctttccattggACAAAGAATACAGAGCATAAAGgaacttttgcattttttttctgaagaattAAAAGCATTAGCACGGAACGTCCTGCAGGCTTCTCTGTATTTCACCGCATAAAGACTCTAAAAATATTTCCTCACTAGGctatttaatgaaataattaaaagcaacttCCTGTCCTTACCATCggtcaccaaaaaaaaaaaactaaacaaaaccccccaaaaaagtggCCTTTTGCAAATTTCTTCTAGGTCTTAAAAAGATAAGTCTAAAATTCTAATTTCATGTATACTTTTGAAGACAGATTTAACTGGCTACACGGTGTTTCATTTTACTctgctactttttttttttcttttctttttctccaccAGTCTCAATACTCTAGTGTGTAGAGGGAACTGACACGGGTCACATGACCAGAATCATTCTGAAGCTGCTGGTATCCAAACTGCACAGGGCGCCCCCTGTTGGCCGCACCcgaaaaacaaacccaaatcATAAACCATTACTGTTGCTGAAACCGATCCATTCTATACTGTAAGTAtgatacaatatacaaaagaaaatctataatacatattcatatgtatatatgtgtgtacatatacacatacatacatatatatacacacacacgtatatatgacacacatatatacataaatacactgtCAATGTCAGAAACTGCTCTAAGcactgagggaaaaaataaatctttggaTTGCGCATGTCTTACAAGGTAGATATTTTAAAGAGCATCGAGAATAATTAAAAGGgaggaaattaattttaaaataaaataaaaatcacacaaaagcaACCTTAATGCACACTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36138 False 1767 lncRNA 0.39 1 43894185 43895951
TU36139 True 1843 lncRNA 0.39 1 43894109 43895951
TU36140 False 944 lncRNA 0.33 1 43894185 43895128

Neighbor

gene id symbol gene type direction distance location
AMCG00008149 LOC106572085,LOC107705722 coding upstream 1011 43854025 ~ 43893098 (+)
AMCG00008150 eef1a2,LOC108429306,LOC107724190,LOC107551525,LOC107705720 coding upstream 198545 43678115 ~ 43695564 (+)
AMCG00008145 id1 coding upstream 230401 43662564 ~ 43663708 (+)
AMCG00008146 hm13,LOC106572089,LOC106566469 coding upstream 272966 43605257 ~ 43621143 (+)
AMCG00008140 NA coding upstream 387056 43497288 ~ 43507053 (+)
AMCG00008154 NA coding downstream 80350 43976301 ~ 43999833 (+)
AMCG00008155 NA coding downstream 105783 44001734 ~ 44034340 (+)
AMCG00008156 NA coding downstream 138435 44034386 ~ 44036127 (+)
AMCG00008153 NA coding downstream 144827 44040778 ~ 44044810 (+)
AMCG00008157 NA coding downstream 210504 44106455 ~ 44131719 (+)
G28678 NA non-coding upstream 692906 43177802 ~ 43201203 (+)
G28637 NA non-coding upstream 773328 43109050 ~ 43120781 (+)
G28548 NA non-coding upstream 1271952 42621950 ~ 42622157 (+)
G28527 NA non-coding upstream 1307441 42584232 ~ 42586668 (+)
G28511 NA non-coding upstream 1393128 42500674 ~ 42500981 (+)
G28931 col9a3,LOC106571930 non-coding downstream 158014 44053965 ~ 44056608 (+)
G28956 NA non-coding downstream 795590 44691541 ~ 44749908 (+)
G28991 NA non-coding downstream 872726 44768677 ~ 44816663 (+)
G28995 NA non-coding downstream 899973 44795924 ~ 44798463 (+)
G29148 NA non-coding downstream 1457765 45353716 ~ 45354079 (+)
AMCG00008132 NA other upstream 588579 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 738037 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 785867 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 1456881 42413632 ~ 42437228 (+)
G28395 NA other upstream 1900732 41992859 ~ 41993377 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 1127197 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 1251446 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 1444623 45340574 ~ 45343914 (+)
G29183 NA other downstream 1544562 45440513 ~ 45441064 (+)
G29353 NA other downstream 2371940 46267891 ~ 46268327 (+)

Expression


Co-expression Network