G28900


Basic Information

Item Value
gene id G28900
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43863607 ~ 43893808 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU36187
GGAGCTGTCTGTGTTAACTGCAGCTTTAGACACACAGGCTGGTTAGAAATGAACTGAAGATCCATCCCTTCACACTAGCAATAAGCACACCAGAGACTGGTTGTAAAAATGGGATATCTGGCATTCAACACTTTATTCACAAACTATTAACCTCTATCAAATGTTCACTGGtaaaccaaagaaaacaagaaatgtctgCAGGGTTTATGTACAAGGCATGGCctgtttattgtgtatttcGATTGAAACTCTTCTGTTTCAGATACAGTAGTCCCTTTTAAAAAGTGCACCCCGAGAtccaagtcttttttttcttcgttgtgaaaactaaacaaacaaaagactaGGAATTCAGTTTCACAGGTTGTATAAAAGTTGTGACTGGGAGTACAGACTTAAATTGGGTTCATCTGGAAGAGGCCTTGTGATAGGAAATGAACCTATAAAAATCACAAGGCAGAActactgttttttaaatcttgttatacagaacacattgttgaataggttttttttttgtttgtttttttaccttgtttgtgtattataaaatatattttgacatttacattaattgcaaaacatacattcatatacatacagcaatttatatatcttttttgttttttcagactGTCATAGCACCAAGTATAGCAAAGACAAAATAACCAGGAACAGCAATCTAACATTAGAAGTGACAttttgttaagttttttttttttttttttttttttttttttttttttttttttttttttttt

Function

GO: NA

KEGG:

id description
ko05014 Amyotrophic lateral sclerosis

RNA

RNA id representative length rna type GC content exon number start site end site
TU36187 True 761 lncRNA 0.32 2 43863607 43893808

Neighbor

gene id symbol gene type direction distance location
AMCG00008148 mrgbp,LOC106566471 coding downstream 187230 43666568 ~ 43676377 (-)
AMCG00008147 NA coding downstream 307574 43533559 ~ 43556033 (-)
AMCG00008135 edem2,LOC107697010 coding downstream 423541 43432676 ~ 43440066 (-)
AMCG00008136 trpc4ap,LOC106582896 coding downstream 431521 43411209 ~ 43432086 (-)
AMCG00008139 NA coding downstream 454674 43396590 ~ 43408933 (-)
AMCG00008152 ncoa3,LOC107090280 coding upstream 3408 43897216 ~ 43922028 (-)
AMCG00008151 LOC106519038,LOC106571933,LOC103357347,LOC104951675 coding upstream 68270 43962078 ~ 43972300 (-)
AMCG00008159 col9a3 coding upstream 151125 44044933 ~ 44071985 (-)
AMCG00008158 NA coding upstream 179855 44073663 ~ 44082848 (-)
AMCG00008164 NA coding upstream 827931 44721739 ~ 44740915 (-)
G28532 NA non-coding downstream 1268747 42522805 ~ 42594860 (-)
G28512 NA non-coding downstream 1362611 42500677 ~ 42500996 (-)
G28509 NA non-coding downstream 1386617 42475720 ~ 42476990 (-)
G28456 NA non-coding downstream 1561510 42301277 ~ 42302097 (-)
G28446 NA non-coding downstream 1573362 42283959 ~ 42290245 (-)
G28907 NA non-coding upstream 371 43894179 ~ 43895951 (-)
G28914 NA non-coding upstream 102310 43996118 ~ 44000866 (-)
G28973 NA non-coding upstream 593402 44487210 ~ 44487419 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding upstream 772535 44666343 ~ 44666577 (-)
G28977 cdh4,LOC101161393 non-coding upstream 786008 44679816 ~ 44680042 (-)
AMCG00008144 phf20,LOC107727854 other downstream 280194 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 743443 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 1098953 42761004 ~ 42764654 (-)
AMCG00008104 samd10 other downstream 1462533 42359900 ~ 42401074 (-)
AMCG00008095 NA other downstream 1774114 42083474 ~ 42089493 (-)
G28970 NA other upstream 524066 44417874 ~ 44418196 (-)
AMCG00008192 NA other upstream 1255693 45149501 ~ 45228504 (-)
G29301 NA other upstream 2156887 46050695 ~ 46054346 (-)
G29361 NA other upstream 2587138 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 3686331 47580139 ~ 47607012 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G813990 NA non-coding NC_048573.1 CM023227.2 49491204 ~ 49493791 (-)