G28907


Basic Information

Item Value
gene id G28907
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43894179 ~ 43895951 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU36196
NNACTCTGAAGTCACAtttgaatacaatttttttaatagacAACCGGTgagacactttattttttttaatttttaggcACTTTTATTTCTGATGCTAAAGCGGAGGGGGAGTGGGCACGGCTGGGGAGTTGGGGGTTTGCAGTTTTTGATTTTATCATCAgatcttttaataaaacactgcaaGTGTTGAATACACAAGTGGCTCATCCTACTGCTAAGGTGTCCCTCAGGCTTGTGGCCTGACAGGTTGAGTAGGAGTGCCGAGAAGAGTGCCGAGAAGAGCGCCGAGCACAGACCGCATGTGTTCGCTTTCCCTGCTCTCTTAGTAGAGCACTGTTGTCTCCTAAGCGCCAGTCCCCCGTGTTTAGATGGTTTATCAACGTGAGGAAGCGGTGAGTCCCTGTTTTCATTCCACACATGCTCCCCACAACGTCTGTAAAACTACTACCAGAAGTTAGTACCGTGTGCCCTAGTCTGTTGAAacaccaaatacattttcaacattttttgtatttgttgcatTAAAGAAGACACCCATGTGTAGAAGGCCTTCAgcggctgttttttttttcttttcctccccaTCCCTCCTTTAGGTTACCTTGGCTGTTTGTAATGAACCAGGGCAGATAGCGAGCCAGGAGTCTTGTCTAGCAGTGTGTGCAGGAAGCAGGCGTGATGTAAAGCCCTGTAATGGGCCGTAGTGTTGAGACTAGGCAGAGAGAAATGATTTGTGGGGAATGAGTCGAGCAGGAGGTGAGGAGGTAATGGGGggtggtggtgtgggggggttgtctgtaatatttaattattcttgtACCTTGGCAGTGTGCATTAAGGTtgcttttgtgtgatttttattttattttaaaattaatttcctcCCTTTTAATTATTCTCGATGCTCTTTAAAATATCTACCTTGTAAGACATGCGCAAtccaaagatttattttttccctcagtgCTTAGAGCAGTTTCTGACATTGacagtgtatttatgtatatatgtgtgtcatatatacgtgtgtgtgtatatatatgtatgtatgtgtatatgtacacacatatatacatatgaatatgtattatagattttcttttgtatattgtatcaTACTTACAGTATAGAATGGATCGGTTTCAGCAACAGTAATGGTTTATgatttgggtttgtttttcgGGTGCGGCCAACAGGGGGCGCCCTGTGCAGTTTGGATACCAGCAGCTTCAGAATGATTCTGGTCATGTGACCCGTGTCAGTTCCCTCTACACACTAGAGTATTGAGACTggtggagaaaaagaaaagaaaaaaaaaaagtagcagAGTAAAATGAAACACCGTGTAGCCAGTTAAATCTGTCTTCAAAAGTATACATGAAATTAGAATTTTAGACTTATCTTTTTAAGACCTAGAAGAAATTTGCAAAAGGccacttttttggggggttttgtttagttttttttttttggtgaccGATGGTAAGGACAGGaagttgcttttaattatttcattaaatagCCTAGTGAGGAAATATTTTTAGAGTCTTTATGCGGTGAAATACAGAGAAGCCTGCAGGACGTTCCGTGCTAATGCTTTTaattcttcagaaaaaaaatgcaaaagttcCTTTATGCTCTGTATTCTTTGTccaatggaaagaaaaactaattacagaaaattaaaaatatgggGTCATAATTTCAGGATGTAAATtactattgcattttttttttcttacttggTTCTTGATGttaatattgatgtaaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36196 True 1773 lncRNA 0.39 1 43894179 43895951

Neighbor

gene id symbol gene type direction distance location
AMCG00008148 mrgbp,LOC106566471 coding downstream 217802 43666568 ~ 43676377 (-)
AMCG00008147 NA coding downstream 338146 43533559 ~ 43556033 (-)
AMCG00008135 edem2,LOC107697010 coding downstream 454113 43432676 ~ 43440066 (-)
AMCG00008136 trpc4ap,LOC106582896 coding downstream 462093 43411209 ~ 43432086 (-)
AMCG00008139 NA coding downstream 485246 43396590 ~ 43408933 (-)
AMCG00008152 ncoa3,LOC107090280 coding upstream 1265 43897216 ~ 43922028 (-)
AMCG00008151 LOC106519038,LOC106571933,LOC103357347,LOC104951675 coding upstream 66127 43962078 ~ 43972300 (-)
AMCG00008159 col9a3 coding upstream 148982 44044933 ~ 44071985 (-)
AMCG00008158 NA coding upstream 177712 44073663 ~ 44082848 (-)
AMCG00008164 NA coding upstream 825788 44721739 ~ 44740915 (-)
G28900 NA non-coding downstream 371 43863607 ~ 43893808 (-)
G28532 NA non-coding downstream 1299319 42522805 ~ 42594860 (-)
G28512 NA non-coding downstream 1393183 42500677 ~ 42500996 (-)
G28509 NA non-coding downstream 1417189 42475720 ~ 42476990 (-)
G28456 NA non-coding downstream 1592082 42301277 ~ 42302097 (-)
G28914 NA non-coding upstream 100167 43996118 ~ 44000866 (-)
G28973 NA non-coding upstream 591259 44487210 ~ 44487419 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding upstream 770392 44666343 ~ 44666577 (-)
G28977 cdh4,LOC101161393 non-coding upstream 783865 44679816 ~ 44680042 (-)
G28978 NA non-coding upstream 785474 44681425 ~ 44681769 (-)
AMCG00008144 phf20,LOC107727854 other downstream 310766 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 774015 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 1129525 42761004 ~ 42764654 (-)
AMCG00008104 samd10 other downstream 1493105 42359900 ~ 42401074 (-)
AMCG00008095 NA other downstream 1804686 42083474 ~ 42089493 (-)
G28970 NA other upstream 521923 44417874 ~ 44418196 (-)
AMCG00008192 NA other upstream 1253550 45149501 ~ 45228504 (-)
G29301 NA other upstream 2154744 46050695 ~ 46054346 (-)
G29361 NA other upstream 2584995 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 3684188 47580139 ~ 47607012 (-)

Expression


Co-expression Network