G28956


Basic Information

Item Value
gene id G28956
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44691541 ~ 44749908 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU36252
tttttttgttttttTAAATGTTTAGACTGACTTTTATTGCAAGAGTAAAGCACTTGTATTTCTAAAAACTGCAAATTTTGTAGTTTTCATGGCTTCCCAccaaataaaagggaaaacggTGTGATCTATGTTGTggttttcttcttttgcttttcggtttcttccttttctttttcaatttctgAGACGTACTTCTCAATTTCCTCttgatttaaaatctgcagAGATCTTTAGTGGCTCATCACGCCTCATGACTGCCAGCTCAATGTTCTTGCCTCCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36252 True 282 lncRNA 0.35 3 44691541 44749908

Neighbor

gene id symbol gene type direction distance location
AMCG00008162 cdh4,LOC106571924 coding upstream 7841 44665636 ~ 44683700 (+)
AMCG00008167 NA coding upstream 37636 44577372 ~ 44653905 (+)
AMCG00008160 NA coding upstream 423218 44259975 ~ 44268323 (+)
AMCG00008157 NA coding upstream 559822 44106455 ~ 44131719 (+)
AMCG00008153 NA coding upstream 646731 44040778 ~ 44044810 (+)
AMCG00008169 ss18l1 coding downstream 3137 44753045 ~ 44760831 (+)
AMCG00008168 NA coding downstream 16237 44766145 ~ 44770112 (+)
AMCG00008170 NA coding downstream 23160 44773068 ~ 44774474 (+)
AMCG00008171 NA coding downstream 195844 44945752 ~ 44949206 (+)
AMCG00008179 NA coding downstream 248321 44998229 ~ 45012622 (+)
G28931 col9a3,LOC106571930 non-coding upstream 634933 44053965 ~ 44056608 (+)
G28862 NA non-coding upstream 795590 43894109 ~ 43895951 (+)
G28678 NA non-coding upstream 1490338 43177802 ~ 43201203 (+)
G28637 NA non-coding upstream 1570760 43109050 ~ 43120781 (+)
G28548 NA non-coding upstream 2069384 42621950 ~ 42622157 (+)
G28991 NA non-coding downstream 18769 44768677 ~ 44816663 (+)
G28995 NA non-coding downstream 46016 44795924 ~ 44798463 (+)
G29148 NA non-coding downstream 603808 45353716 ~ 45354079 (+)
G29153 NA non-coding downstream 628103 45378011 ~ 45378353 (+)
G29223 NA non-coding downstream 789861 45539769 ~ 45542206 (+)
AMCG00008132 NA other upstream 1386011 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 1535469 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 1583299 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 2254313 42413632 ~ 42437228 (+)
G28395 NA other upstream 2698164 41992859 ~ 41993377 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 273240 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 397489 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 590666 45340574 ~ 45343914 (+)
G29183 NA other downstream 690605 45440513 ~ 45441064 (+)
G29353 NA other downstream 1517983 46267891 ~ 46268327 (+)

Expression


Co-expression Network