G28974 (LOC101069589,LOC106525190,LOC104949831)


Basic Information

Item Value
gene id G28974
gene name LOC101069589,LOC106525190,LOC104949831
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44666343 ~ 44666577 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU36273
GCTGCATGAAGCGGTCGGGGTCGTTGGCGGCGAACGTGGAAAGGGTGGTGCCAGCGGGGACGCCCTCCTCAAAGCGAATGAGTTTGGGGTTGGCGGGGAAGAAAGGCGCCTCGTTCACGTCCATGACCGAGATGGTGACCCCTGCTGTGGACTGGAAGGAGGACTGAATACCGTTGGCAAGAGGAGCCTGATTGGACACGATCACGGTTAACATGAAGGCGCGGTTCATCTCGTA

Function

NR:

description
PREDICTED: cadherin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36273 True 235 lncRNA 0.60 1 44666343 44666577

Neighbor

gene id symbol gene type direction distance location
AMCG00008158 NA coding downstream 583495 44073663 ~ 44082848 (-)
AMCG00008159 col9a3 coding downstream 594358 44044933 ~ 44071985 (-)
AMCG00008151 LOC106519038,LOC106571933,LOC103357347,LOC104951675 coding downstream 694043 43962078 ~ 43972300 (-)
AMCG00008152 ncoa3,LOC107090280 coding downstream 744315 43897216 ~ 43922028 (-)
AMCG00008148 mrgbp,LOC106566471 coding downstream 989966 43666568 ~ 43676377 (-)
AMCG00008164 NA coding upstream 55162 44721739 ~ 44740915 (-)
AMCG00008165 psma7,LOC106571922 coding upstream 82513 44749090 ~ 44752458 (-)
AMCG00008163 NA coding upstream 110076 44776653 ~ 44778533 (-)
AMCG00008166 NA coding upstream 112159 44778736 ~ 44786186 (-)
AMCG00008174 NA coding upstream 129349 44795926 ~ 44814080 (-)
G28973 NA non-coding downstream 178924 44487210 ~ 44487419 (-)
G28914 NA non-coding downstream 665477 43996118 ~ 44000866 (-)
G28907 NA non-coding downstream 770392 43894179 ~ 43895951 (-)
G28900 NA non-coding downstream 772535 43863607 ~ 43893808 (-)
G28532 NA non-coding downstream 2071483 42522805 ~ 42594860 (-)
G28977 cdh4,LOC101161393 non-coding upstream 13239 44679816 ~ 44680042 (-)
G28978 NA non-coding upstream 14848 44681425 ~ 44681769 (-)
G28976 NA non-coding upstream 15860 44682437 ~ 44688175 (-)
G29081 NA non-coding upstream 367868 45034445 ~ 45036413 (-)
G29170 NA non-coding upstream 687230 45353807 ~ 45354086 (-)
G28970 NA other downstream 248147 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 1082930 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 1546179 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 1901689 42761004 ~ 42764654 (-)
AMCG00008104 samd10 other downstream 2265269 42359900 ~ 42401074 (-)
AMCG00008192 NA other upstream 482924 45149501 ~ 45228504 (-)
G29301 NA other upstream 1384118 46050695 ~ 46054346 (-)
G29361 NA other upstream 1814369 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 2913562 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 3000065 47666642 ~ 47918462 (-)

Expression


Co-expression Network