G28978


Basic Information

Item Value
gene id G28978
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44681425 ~ 44681769 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU36278
CCCCAATGTCACCTGGATGAGGAACGACCGGTCGGATTGGATACTGGGACTCCGCCACTACAGGCCTCTCGTCCACGCGTCTGATGCCAGTGGGTTTACTGCTGATGATGTGATCCAGAGACTCGGGCTGCTGCAGTTGGCTCAGGTCATAGTCCTGCAACACAGGGATGGAATAGAGGGCAATTAAGATGAGTGAATGCAGAATCACCTTTTTTGCTAAAATATCGTCCCTTTGCCACAAAAGTTTGCAGAAGACGAGCCGTGTTGCCAAATTAGCCAGAAAGCACTAGCtttagctgtatatatattttttaatcaattcttGTATTAAACTTTTCATTCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36278 True 345 lncRNA 0.46 1 44681425 44681769

Neighbor

gene id symbol gene type direction distance location
AMCG00008158 NA coding downstream 598577 44073663 ~ 44082848 (-)
AMCG00008159 col9a3 coding downstream 609440 44044933 ~ 44071985 (-)
AMCG00008151 LOC106519038,LOC106571933,LOC103357347,LOC104951675 coding downstream 709125 43962078 ~ 43972300 (-)
AMCG00008152 ncoa3,LOC107090280 coding downstream 759397 43897216 ~ 43922028 (-)
AMCG00008148 mrgbp,LOC106566471 coding downstream 1005048 43666568 ~ 43676377 (-)
AMCG00008164 NA coding upstream 39970 44721739 ~ 44740915 (-)
AMCG00008165 psma7,LOC106571922 coding upstream 67321 44749090 ~ 44752458 (-)
AMCG00008163 NA coding upstream 94884 44776653 ~ 44778533 (-)
AMCG00008166 NA coding upstream 96967 44778736 ~ 44786186 (-)
AMCG00008174 NA coding upstream 114157 44795926 ~ 44814080 (-)
G28977 cdh4,LOC101161393 non-coding downstream 1383 44679816 ~ 44680042 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding downstream 14848 44666343 ~ 44666577 (-)
G28973 NA non-coding downstream 194006 44487210 ~ 44487419 (-)
G28914 NA non-coding downstream 680559 43996118 ~ 44000866 (-)
G28907 NA non-coding downstream 785474 43894179 ~ 43895951 (-)
G28976 NA non-coding upstream 668 44682437 ~ 44688175 (-)
G29081 NA non-coding upstream 352676 45034445 ~ 45036413 (-)
G29170 NA non-coding upstream 672038 45353807 ~ 45354086 (-)
G29182 NA non-coding upstream 737821 45419590 ~ 45420462 (-)
G29192 NA non-coding upstream 780010 45461779 ~ 45462530 (-)
G28970 NA other downstream 263229 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 1098012 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 1561261 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 1916771 42761004 ~ 42764654 (-)
AMCG00008104 samd10 other downstream 2280351 42359900 ~ 42401074 (-)
AMCG00008192 NA other upstream 467732 45149501 ~ 45228504 (-)
G29301 NA other upstream 1368926 46050695 ~ 46054346 (-)
G29361 NA other upstream 1799177 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 2898370 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 2984873 47666642 ~ 47918462 (-)

Expression


Co-expression Network