G29081


Basic Information

Item Value
gene id G29081
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45034445 ~ 45036413 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU36401
ttcctttttctttcaatatttacaatttattttttattatttaaattttatggCTTCATTGtacataaataacatgaaaatgCTCCAACACCTGCATGACAGACAACTGGCTGTGGAGTGAGAGGAGAAAcgacccaaaaaaaaaaaaaaaaaaaaatccttctgcAACTCATGCTTTTAATCGTGTCCTGCTGGTAAAATCAAACATCTCATTGTTCAAGCTTTCAAAGGAGTTTTGATCATTTCCCAGGATGgggatgaagaaaaaaagaaaaaaaaaaaaatcctgaacaAGAATGTAACGGTTTCTTTCCTTTAAATAGGTTAACATAAATACTGTAGATTTACCTTAAAGTTGCAGCAATATATTTAAGTGTAcatgagcatttttttttttttttttttttttttttttaaagcattgtcTGACATGATTATCTTATGATTAACagttatacaaaatacacaggTATTACAGTGTGAACTACCTTataaatatttagccaatactCCTtgtcccctccccccccaaTTGTATGATTGCATATTGAAATCAAATGCGAGCTACTTTGATCTACAATAACTTAACATAGAAAAAGTGAACATGAATGTGAAAGACAATGAAAGATAGTCCTACCTacatttcaggtttattttcctttaaaaaataataaagaatggCTTATGATAATcacagtgggggagggggggtatgAAAATGAGAATCTGGAAATAGTAGTTAAGGcctcatgaaataaaataagtattcctgcaggtttatttttgtttgacaaCTTTAATTTCTTCAAGAACATGTCAAGTCTAGAATTGTCCTCATCCTAGGATCTCTTCATAACAGAccagaaattacttttttgtccCTTTAGGGAGACTGTAACTTTTAAATTCCCCTCTAGGGTCTCCCACTCCTGAGAAAGGCCGACTCTTTAAGAGCCCAGCCCGCAGCGTCTGACGGAACCTGGGgaaatggggagaaaaaaaaaaaaaaaaacctccatcCCTTCACAGGTGAAAGGGTCTCGTTTTCCTCCTCTGCTCACAGGTATTGTTTATTGAGCCTCCAGTTCAGCCCTCCTACTCCTGCACTGAACCTAGTTGTGGAGCTTGACGTTGGCCATTCCTCCTCCGATCTTCAGTAACTTTGGATCCTCACAGCTCAGGTCAGGACTGCGTTTGGCAACAGACATGGGTCAGGTTTCCATTGtttgataaaaaataagtgtattAAAGAGTTTCTGGAAGCCCTTGATGCGGCCAGGTATCCTTCAGGCCCAGAACATCATCCTGGTGTCACGGGTTGTATCATGTCATAGTGCAATAAACAGTCACACTTCCTCCTctcctcctcctcctcctccttcgcTCCCCTTCCACTCTTACATACTTCATTCCCCAACCCACCAGACAGCTCTCACTGCATGCGGTCGGGGTGTACCTGCTGGGGGGGGTACTGGACAAAGGCAGCTGTGGGGGGCGCGGCTCCCGCAGAGAGGGACTGCTGGACTGTGGTGGGGGCGGCGGCCGGGTTAGTGGGATAGCTGTAACCCAGGAAGCCGGGCGAGGCGGCGTAGGGGTACTGCTCGAAGGCAGTGGAGGCATACTGGGCGTAGGCGGCGCTGTAGTCCAGGTAGGGAGAGTTCACGGAGGACATCTGGGTGGGGATCACCAGTCCTGGCTGCATGAAGGCCTGGGGGTACATGTACTGCTGGGCTAGCCTGGAAACAAAAAGACATGGGTTAGccaagagagaggggaagagttGTTGTGGCCAAGCATCAGTGGTTAAAAATCAAGGCCTGTAAAAATGATTGGAAAGAACCAGAACATCCAGTCTTAGTCCTGGGGCACCCAAAATGTAACGGCTTGCAAATCTAGTTTTTAACTGCAGTCTCTCATCGACC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU36401 True 1922 lncRNA 0.43 2 45034445 45036413

Neighbor

gene id symbol gene type direction distance location
AMCG00008180 bmp7b,bmp7,LOC105030895,LOC107601355,LOC106571911,LOC107750885,LOC106566746 coding downstream 36529 44997485 ~ 44997916 (-)
AMCG00008176 LOC103370837,LOC107750885 coding downstream 50700 44971340 ~ 44983745 (-)
AMCG00008175 NA coding downstream 71268 44951398 ~ 44963177 (-)
AMCG00008172 NA coding downstream 151233 44879010 ~ 44883212 (-)
AMCG00008173 NA coding downstream 162230 44852289 ~ 44872215 (-)
AMCG00008183 NA coding upstream 26368 45062781 ~ 45070971 (-)
AMCG00008182 cstf1 coding upstream 50784 45087197 ~ 45092120 (-)
AMCG00008184 NA coding upstream 56371 45092784 ~ 45095951 (-)
AMCG00008191 NA coding upstream 196976 45233389 ~ 45234479 (-)
AMCG00008190 NA coding upstream 198646 45235059 ~ 45239415 (-)
G28976 NA non-coding downstream 346270 44682437 ~ 44688175 (-)
G28978 NA non-coding downstream 352676 44681425 ~ 44681769 (-)
G28977 cdh4,LOC101161393 non-coding downstream 354403 44679816 ~ 44680042 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding downstream 367868 44666343 ~ 44666577 (-)
G28973 NA non-coding downstream 547026 44487210 ~ 44487419 (-)
G29170 NA non-coding upstream 317394 45353807 ~ 45354086 (-)
G29182 NA non-coding upstream 383177 45419590 ~ 45420462 (-)
G29192 NA non-coding upstream 425366 45461779 ~ 45462530 (-)
G29206 NA non-coding upstream 453594 45490007 ~ 45490890 (-)
G29249 NA non-coding upstream 563146 45599559 ~ 45714037 (-)
G28970 NA other downstream 616249 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 1451032 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 1914281 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 2269791 42761004 ~ 42764654 (-)
AMCG00008104 samd10 other downstream 2633371 42359900 ~ 42401074 (-)
AMCG00008192 NA other upstream 113088 45149501 ~ 45228504 (-)
G29301 NA other upstream 1014282 46050695 ~ 46054346 (-)
G29361 NA other upstream 1444533 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 2543726 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 2630229 47666642 ~ 47918462 (-)

Expression


Co-expression Network