G29170


Basic Information

Item Value
gene id G29170
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45353807 ~ 45354086 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU36509
TAGccggtctccagaccttaatcccatagaaaatctgtggagggagctgagggttcgagttgccaaacgtcagcctcgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggacaactacaagaaacgtctgacctctgtgattgccaacaagggttttgccaccaagtactaagtcgaaggggtcaaatacttatttccctcattaacatgcaaatcaatgtataacttttttgaa

Function

GO:

id name namespace
GO:0007163 establishment or maintenance of cell polarity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36509 True 280 lncRNA 0.45 1 45353807 45354086

Neighbor

gene id symbol gene type direction distance location
AMCG00008195 NA coding downstream 3720 45344179 ~ 45350087 (-)
AMCG00008197 LOC106572146 coding downstream 13926 45337454 ~ 45339881 (-)
AMCG00008196 NA coding downstream 50841 45295300 ~ 45302966 (-)
AMCG00008189 LOC107550338,LOC103365918,LOC106955159,LOC104947949,LOC107551495 coding downstream 73453 45272415 ~ 45280354 (-)
AMCG00008190 NA coding downstream 114392 45235059 ~ 45239415 (-)
AMCG00008202 LOC102194700 coding upstream 55177 45409263 ~ 45414813 (-)
AMCG00008201 LOC106582837 coding upstream 67679 45421765 ~ 45435361 (-)
AMCG00008203 NA coding upstream 113097 45467183 ~ 45484122 (-)
AMCG00008209 ift52,LOC107730620 coding upstream 144020 45498106 ~ 45503562 (-)
AMCG00008206 sgk2a,sgk2,LOC107564803 coding upstream 149956 45504042 ~ 45518710 (-)
G29081 NA non-coding downstream 317394 45034445 ~ 45036413 (-)
G28976 NA non-coding downstream 665632 44682437 ~ 44688175 (-)
G28978 NA non-coding downstream 672038 44681425 ~ 44681769 (-)
G28977 cdh4,LOC101161393 non-coding downstream 673765 44679816 ~ 44680042 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding downstream 687230 44666343 ~ 44666577 (-)
G29182 NA non-coding upstream 65504 45419590 ~ 45420462 (-)
G29192 NA non-coding upstream 107693 45461779 ~ 45462530 (-)
G29206 NA non-coding upstream 135921 45490007 ~ 45490890 (-)
G29249 NA non-coding upstream 245473 45599559 ~ 45714037 (-)
G29284 NA non-coding upstream 439592 45793678 ~ 45793951 (-)
AMCG00008192 NA other downstream 125303 45149501 ~ 45228504 (-)
G28970 NA other downstream 935611 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 1770394 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 2233643 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 2589153 42761004 ~ 42764654 (-)
G29301 NA other upstream 696609 46050695 ~ 46054346 (-)
G29361 NA other upstream 1126860 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 2226053 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 2312556 47666642 ~ 47918462 (-)
G29544 LOC100846954 other upstream 2769839 48123925 ~ 48124682 (-)

Expression


Co-expression Network