G29192


Basic Information

Item Value
gene id G29192
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45461779 ~ 45462530 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU36533
AAAGAATCATCTGAGGTTGATATGTATTGTATCCAAgcaattggaaaaaagtgttagagttttgaaaaatgtgcattttgatcATCGGTTGTGAGTTTTGTgtctagagttttgaaaaatgacatcaagGATCTGAAATGAGTGCCAAAGTGATTGTAAAAGtgtaaaggaaaaacctgaataaatgattgGAGAAACATAATGAAGGCAGATTCCTCCAATCAGGTGCActgcattatataattaagcgattaacatcctatcatgctctgtggcatgtatgaaaatgctgagcaggcccagttgatctcaattttggatcaagatggcaacaGGAAAgtgatctaagtgactttgaaagaggggtcattattggggcacgaatggcaggagcttcagtcacaaagacgctcaactggctagtgtttcaataggaacagtgactaaagttacatctgcatttagatctatgagaaagacatcagtaaatagggttggagattgtggttgaaagcacacatttgatGACTGTGATGCTCatgcattactgtgatatgtaagggaaaaacagaagatcaactctttcccaggtgactgagaatgtcaatgcaggacgtgatcagactgtgtcagcaagaacagacCGTTGAGTACTACACGGAGAGGGatatagtagggctgcagtgcataaacctgtcattaaaaagacaaatgcacatctcaGAGTTCATTGGACTGGACTGGTGTGAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36533 True 752 lncRNA 0.40 1 45461779 45462530

Neighbor

gene id symbol gene type direction distance location
AMCG00008201 LOC106582837 coding downstream 26418 45421765 ~ 45435361 (-)
AMCG00008202 LOC102194700 coding downstream 46966 45409263 ~ 45414813 (-)
AMCG00008195 NA coding downstream 111692 45344179 ~ 45350087 (-)
AMCG00008197 LOC106572146 coding downstream 121898 45337454 ~ 45339881 (-)
AMCG00008196 NA coding downstream 158813 45295300 ~ 45302966 (-)
AMCG00008203 NA coding upstream 4653 45467183 ~ 45484122 (-)
AMCG00008209 ift52,LOC107730620 coding upstream 35576 45498106 ~ 45503562 (-)
AMCG00008206 sgk2a,sgk2,LOC107564803 coding upstream 41512 45504042 ~ 45518710 (-)
AMCG00008208 NA coding upstream 62697 45525227 ~ 45537055 (-)
AMCG00008207 LOC108254894,LOC105009000,LOC108427776 coding upstream 77227 45539757 ~ 45546688 (-)
G29182 NA non-coding downstream 41317 45419590 ~ 45420462 (-)
G29170 NA non-coding downstream 107693 45353807 ~ 45354086 (-)
G29081 NA non-coding downstream 425366 45034445 ~ 45036413 (-)
G28976 NA non-coding downstream 773604 44682437 ~ 44688175 (-)
G28978 NA non-coding downstream 780010 44681425 ~ 44681769 (-)
G29206 NA non-coding upstream 27477 45490007 ~ 45490890 (-)
G29249 NA non-coding upstream 137029 45599559 ~ 45714037 (-)
G29284 NA non-coding upstream 331148 45793678 ~ 45793951 (-)
G29294 NA non-coding upstream 516730 45979260 ~ 45979468 (-)
G29348 NA non-coding upstream 788133 46250663 ~ 46251181 (-)
AMCG00008192 NA other downstream 233275 45149501 ~ 45228504 (-)
G28970 NA other downstream 1043583 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 1878366 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 2341615 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 2697125 42761004 ~ 42764654 (-)
G29301 NA other upstream 588165 46050695 ~ 46054346 (-)
G29361 NA other upstream 1018416 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 2117609 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 2204112 47666642 ~ 47918462 (-)
G29544 LOC100846954 other upstream 2661395 48123925 ~ 48124682 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G184715 NA non-coding NC_048566.1 CM023220.2 75344152 ~ 75344359 (-)
eurasian perch (Perca fluviatilis) G47428 NA non-coding NC_053116.1 CM020913.1 5856565 ~ 5856998 (+)