G29206


Basic Information

Item Value
gene id G29206
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45490007 ~ 45490890 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU36551
tgcaattaatttaatgggacaatataatgtataaaacaatgacAAGCTTCAGGGCCAGAAACAAACATGATGCATGTGAGACTTAAGGAATCCTATAAGATTTGCTTCTCTTACTGTCAGAAtagaaacaaatgcagaatataAATGATGGGAATGGACTTCATACAATTTTTAtatcaaagtacattttacaagcATTTTAATTGTCAATATTCTTAAATAAAGATTTCAAGATTGAAAATGATGGTATACAATGGCATAAGGTCTTTACTGAACCTGTCTGTTTTTACAACTGTAATGAAAAGGTGCCAAGTAAATCAATGTGCAGTAGTTGCTACAAAGCATTATTCAACTAAATAGAAATGTTCCTTAcagattattacattattaatcattgaacaattacatatttattggccagttaaattaaataagattgTGTTTAAGGTGATAAATTACTGGATTATTTGGATGAAAAGCTACACCTCACTATAGAAAACACAGTCAGCCCCCCCAGTGCTATTCACATATTGCTTCCAAGGGATTGACATCAAAACccattatttcagtattttcccTATGCAACATGGCTCTGATTAATTTGCTGAAGTAAAGTGTTTCTTCAAGGGCCAACATTGCATTGCTTTTTCTTATATGGATGTTTCTATGCTTTGTATCAATGACATACAATCACCTTTTTAAATGGTTGTGTACATTTTCAGCTctccaaaacaaatattacatctTTACAGTTATCCAAGCTTTTGGTGCAGGATTAATAATCCAAACGACAGGGTACACCAGATCTTTGAATGTTGTGTTAAACGTGTGCAGATGGACTGGTTTGTCACCACTGTTGTAAAAGGAAATGATACCTTTCTCGT

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A
ko05162 Measles

RNA

RNA id representative length rna type GC content exon number start site end site
TU36551 True 884 lncRNA 0.33 1 45490007 45490890

Neighbor

gene id symbol gene type direction distance location
AMCG00008203 NA coding downstream 5885 45467183 ~ 45484122 (-)
AMCG00008201 LOC106582837 coding downstream 54646 45421765 ~ 45435361 (-)
AMCG00008202 LOC102194700 coding downstream 75194 45409263 ~ 45414813 (-)
AMCG00008195 NA coding downstream 139920 45344179 ~ 45350087 (-)
AMCG00008197 LOC106572146 coding downstream 150126 45337454 ~ 45339881 (-)
AMCG00008209 ift52,LOC107730620 coding upstream 7216 45498106 ~ 45503562 (-)
AMCG00008206 sgk2a,sgk2,LOC107564803 coding upstream 13152 45504042 ~ 45518710 (-)
AMCG00008208 NA coding upstream 34337 45525227 ~ 45537055 (-)
AMCG00008207 LOC108254894,LOC105009000,LOC108427776 coding upstream 48867 45539757 ~ 45546688 (-)
AMCG00008217 NA coding upstream 149396 45640286 ~ 45641803 (-)
G29192 NA non-coding downstream 27477 45461779 ~ 45462530 (-)
G29182 NA non-coding downstream 69545 45419590 ~ 45420462 (-)
G29170 NA non-coding downstream 135921 45353807 ~ 45354086 (-)
G29081 NA non-coding downstream 453594 45034445 ~ 45036413 (-)
G28976 NA non-coding downstream 801832 44682437 ~ 44688175 (-)
G29249 NA non-coding upstream 108669 45599559 ~ 45714037 (-)
G29284 NA non-coding upstream 302788 45793678 ~ 45793951 (-)
G29294 NA non-coding upstream 488370 45979260 ~ 45979468 (-)
G29348 NA non-coding upstream 759773 46250663 ~ 46251181 (-)
G29354 NA non-coding upstream 777003 46267893 ~ 46268278 (-)
AMCG00008192 NA other downstream 261503 45149501 ~ 45228504 (-)
G28970 NA other downstream 1071811 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 1906594 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 2369843 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 2725353 42761004 ~ 42764654 (-)
G29301 NA other upstream 559805 46050695 ~ 46054346 (-)
G29361 NA other upstream 990056 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 2089249 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 2175752 47666642 ~ 47918462 (-)
G29544 LOC100846954 other upstream 2633035 48123925 ~ 48124682 (-)

Expression


Co-expression Network