G29249


Basic Information

Item Value
gene id G29249
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45599559 ~ 45714037 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU36650
TTGAATAGTTAGGAAAActttatttctttccatttaCAGATAATGAACGTTACACTAGACTGGAGGCTACAATTCTGCAGTACATGAGGCAGCTTCACTGTCCAAATCAGATTCATTCTTTCTGAAACTCTTTGGtccagaaaaatacaaattaaagcagTGACCGACCTCAACTCCCTATACATATGGTGTTTGTTATTAAAGACTTCTTGTGTCATCAATAATGCTTTCTCATTGGTATTAAATGAGAGCTGGCATGTTTACAGTAGGCTTCAGGCCAGAAAGGGTTTtggtaacttttttttgtttcgtttttttgcCACAATTCATAATCTGTCCATGCTGGTTTTGAAGGCGTCTTCCAGTTCCTAATGACTCTTTGCACAGCCCCACCTATGCTTGATTTCCTCTCCCTTTCAAATTAGTTATGCCCACAATCCTTTGTCTTACCGTGACCAAATAAAAGTTCAGTAATTTCACAAATTCgatcaatgcattttcaaactgaaccatttttatatattattatttttatttcttggcagacgcccttatccagggcgacttacaatataaacaaacatttggtCTAGCTTCGCCAGCCTCCAAAAGGATCTCGTGAACTATGAAACGGCAGTGTGTCTGAGAGTGAGTGGGTGATGCGTTTCCACAGAGGAAGGAAGCTGCACAGACCAAGAGCTGGGTGAAGCAGGGTGGCCTTCCGCGGTAGCTGCTGGACAGGGAGAGGTTCCTAAAACAAAGTGCTTTCTATCTGACCACAGGTGGGctattacagtgcagtgtagcacACTTACAGGCAGGGATGTGAAACAGCCTGTAGGGAATCTGACAGGCAAGTTGGTTCTGATTTTAGAGGATATGAAAGGTGGTTTTGACCGCAAGATCAAAGTAGCCCATAGTTTTGAAAGGAGGCTctgggagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCTGGACTAAAGCA
>TU36651
TTGAATAGTTAGGAAAActttatttctttccatttaCAGATAATGAACGTTACACTAGACTGGAGGCTACAATTCTGCAGTACATGAGGCAGCTTCACTGTCCAAATCAGATTCATTCTTTCTGAAACTCTTTGGtccagaaaaatacaaattaaagcagTGACCGACCTCAACTCCCTATACATATGGTGTTTGTTATTAAAGACTTCTTGTGTCATCAATAATGCTTTCTCATTGGTATTAAATGAGAGCTGGCATGTTTACAGTAGGCTTCAGGCCAGAAAGGGTTTtggtaacttttttttgtttcgtttttttgcCACAATTCATAATCTGTCCATGCTGGTTTTGAAGGCGTCTTCCAGTTCCTAATGACTCTTTGCACAGCCCCACCTATGCTTGATTTCCTCTCCCTTTCAAATTAGTTATGCCCACAATCCTTTGTCTTACCGTGACCAAATAAAAGTTCAGTAATTTCACAAATTCgatcaatgcattttcaaactgaaccatttttatatattattatttttatttcttggcagacgcccttatccagggcgacttacaatataaacaaacatttggtCTAGCTTCGCCAGCCTCCAAAAGGATCTCGTGAACTATGAAACGGCAGTGTGTCTGAGAGTGAGTGGGTGATGCGTTTCCACAGAGGAAGGAAGCTGCACAGACCAAGAGCTGGGTGAAGCAGGGTGGCCTTCCGCGGTAGCTGCTGGACAGGGAGAGGTTCCTAAAACAAAGTGCTTTCTATCTGACCACAGGTGGGctattacagtgcagtgtagcacACTTACAGGCAGGGATGTGAAACAGCCTGTAGGGAATCTGACAGGCAAGTTGGTTCTGATTTTAGAGGATATGAAAGGTGGTTTTGACCGCAAGATCAAAGTAGCCCATAGTTTTGAAAGGAGGCTctgggagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>TU36654
TTGAATAGTTAGGAAAActttatttctttccatttaCAGATAATGAACGTTACACTAGACTGGAGGCTACAATTCTGCAGTACATGAGGCAGCTTCACTGTCCAAATCAGATTCATTCTTTCTGAAACTCTTTGGtccagaaaaatacaaattaaagcagTGACCGACCTCAACTCCCTATACATATGGTGTTTGTTATTAAAGACTTCTTGTGTCATCAATAATGCTTTCTCATTGGTATTAAATGAGAGCTGGCATGTTTACAGTAGGCTTCAGGCCAGAAAGGGTTTtggtaacttttttttgtttcgtttttttgcCACAATTCATAATCTGTCCATGCTGGTTTTGAAGGCGTCTTCCAGTTCCTAATGACTCTTTGCACAGCCCCACCTATGCTTGATTTCCTCTCCCTTTCAAATTAGTTATGCCCACAATCCTTTGTCTTACCGTGACCAAATAAAAGTTCAGTAATTTCACAAATTCgatcaatgcattttcaaactgaaccatttttatatattattatttttatttcttggcagacgcccttatccagggcgacttacaatataaacaaacatttggtCTAGCTTCGCCAGCCTCCAAAAGGATCTCGTGAACTATGAAACGGCAGTGTGTCTGAGAGTGAGTGGGTGATGCGTTTCCACAGAGGAAGGAAGCTGCACAGACCAAGAGCTGGGTGAAGCAGGGTGGCCTTCCGCGGTAGCTGCTGGACAGGGAGAGGTTCCTAAAACAAAGTGCTTTCTATCTGACCACAGGTGGGctattacagtgcagtgtagcacACTTACAGGCAGGGATGTGAAACAGCCTGTAGGGAATCTGACAGGCAAGTTGGTTCTGATTTTAGAGGATATGAAAGGTGGTTTTGACCGCAAGATCAAAGTAGCCCATAGTTTTGAAAGGAGGCTctgggagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

NR:

description
PREDICTED: putative solute carrier family 22 member 31

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU36650 True 1000 lncRNA 0.42 3 45599559 45714037
TU36651 False 999 lncRNA 0.42 2 45668901 45714037
TU36654 False 986 lncRNA 0.42 2 45686238 45714037

Neighbor

gene id symbol gene type direction distance location
AMCG00008207 LOC108254894,LOC105009000,LOC108427776 coding downstream 52871 45539757 ~ 45546688 (-)
AMCG00008208 NA coding downstream 62504 45525227 ~ 45537055 (-)
AMCG00008206 sgk2a,sgk2,LOC107564803 coding downstream 80849 45504042 ~ 45518710 (-)
AMCG00008209 ift52,LOC107730620 coding downstream 95997 45498106 ~ 45503562 (-)
AMCG00008203 NA coding downstream 115437 45467183 ~ 45484122 (-)
AMCG00008213 NA coding upstream 3355 45717392 ~ 45724427 (-)
AMCG00008214 NA coding upstream 23451 45737488 ~ 45760782 (-)
AMCG00008216 NA coding upstream 63425 45777462 ~ 45786981 (-)
AMCG00008222 NA coding upstream 397899 46111936 ~ 46123767 (-)
AMCG00008223 NA coding upstream 423711 46137748 ~ 46150163 (-)
G29206 NA non-coding downstream 108669 45490007 ~ 45490890 (-)
G29192 NA non-coding downstream 137029 45461779 ~ 45462530 (-)
G29182 NA non-coding downstream 179097 45419590 ~ 45420462 (-)
G29170 NA non-coding downstream 245473 45353807 ~ 45354086 (-)
G29081 NA non-coding downstream 563146 45034445 ~ 45036413 (-)
G29284 NA non-coding upstream 79641 45793678 ~ 45793951 (-)
G29294 NA non-coding upstream 265223 45979260 ~ 45979468 (-)
G29348 NA non-coding upstream 536626 46250663 ~ 46251181 (-)
G29354 NA non-coding upstream 553856 46267893 ~ 46268278 (-)
G29375 NA non-coding upstream 942197 46656234 ~ 46656566 (-)
AMCG00008192 NA other downstream 371055 45149501 ~ 45228504 (-)
G28970 NA other downstream 1181363 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 2016146 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 2479395 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 2834905 42761004 ~ 42764654 (-)
G29301 NA other upstream 336658 46050695 ~ 46054346 (-)
G29361 NA other upstream 766909 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 1866102 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 1952605 47666642 ~ 47918462 (-)
G29544 LOC100846954 other upstream 2409888 48123925 ~ 48124682 (-)

Expression


Co-expression Network