G29383


Basic Information

Item Value
gene id G29383
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 46931359 ~ 46934268 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU36811
CATCacttactattttgacagccggaagtcccgccctccctacgtaccatagaccggaaggcccacctcaccttccggttacccccacctttgaaccggaacttctctctccttcccatcACCCCCagggttaccctttgaccctcccttgtcagccatcttggatgatatcggccatattggatgtcagccatttgtaaggtcataggtcatctggtaagatggtagccattttgctagggtgacatccatcatggtgagggtccgagggtacctcaccctgctggtgtggaggtgtaatgtttaatagcataaactgtgtttttaaggttat

Function

GO:

id name namespace
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36811 True 334 lncRNA 0.50 2 46931359 46934268

Neighbor

gene id symbol gene type direction distance location
AMCG00008228 NA coding downstream 183801 46747193 ~ 46747558 (-)
AMCG00008225 ctnnbl1 coding downstream 692830 46235003 ~ 46238529 (-)
AMCG00008224 ctnnbl1,LOC106566902 coding downstream 696372 46200792 ~ 46234987 (-)
AMCG00008223 NA coding downstream 781196 46137748 ~ 46150163 (-)
AMCG00008222 NA coding downstream 807592 46111936 ~ 46123767 (-)
AMCG00008229 cdh22,LOC106565306,LOC107553911 coding upstream 23597 46957865 ~ 46964572 (-)
AMCG00008230 cdh22 coding upstream 47068 46981336 ~ 47013277 (-)
AMCG00008227 cdh22,LOC107681302,LOC107666158 coding upstream 112454 47046722 ~ 47068199 (-)
AMCG00008231 LOC107681302,LOC107587604 coding upstream 158023 47092291 ~ 47117500 (-)
AMCG00008234 ddx27,LOC107553908,LOC107681294,LOC107587605,LOC107744345 coding upstream 681585 47615853 ~ 47619787 (-)
G29381 NA non-coding downstream 27137 46903792 ~ 46904222 (-)
G29377 NA non-coding downstream 207464 46723633 ~ 46723895 (-)
G29375 NA non-coding downstream 274793 46656234 ~ 46656566 (-)
G29354 NA non-coding downstream 663081 46267893 ~ 46268278 (-)
G29348 NA non-coding downstream 680178 46250663 ~ 46251181 (-)
G29397 NA non-coding upstream 184369 47118637 ~ 47121378 (-)
G29403 NA non-coding upstream 475519 47409787 ~ 47410050 (-)
G29410 NA non-coding upstream 596164 47530432 ~ 47530659 (-)
G29521 NA non-coding upstream 1074389 48008657 ~ 48012955 (-)
G29530 NA non-coding upstream 1093449 48027717 ~ 48030913 (-)
G29361 NA other downstream 449461 46480946 ~ 46481898 (-)
G29301 NA other downstream 877013 46050695 ~ 46054346 (-)
AMCG00008192 NA other downstream 1702855 45149501 ~ 45228504 (-)
G28970 NA other downstream 2513163 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 3347946 43510760 ~ 43583413 (-)
AMCG00008233 NA other upstream 645871 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 732374 47666642 ~ 47918462 (-)
G29544 LOC100846954 other upstream 1189657 48123925 ~ 48124682 (-)
AMCG00008256 arfgef2 other upstream 1268353 48202621 ~ 48291443 (-)
AMCG00008255 NA other upstream 1476817 48411085 ~ 48418933 (-)

Expression


Co-expression Network