G29387 (LOC107575789,LOC100846954)


Basic Information

Item Value
gene id G29387
gene name LOC107575789,LOC100846954
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47038464 ~ 47038892 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU36815
gtgttttgggtcattgtcatgctggaatacccatccacgacccattttcaatgccctggctgagggaaggaggttctcacccaagatttgacggtacatggccccgtccattgTCCcattgatgcggtgcagttgtcctgtccccttagcagaaaaacacccccaaagcataatgtttccacctccatgtttgacggtggggatggtgttcttggggtcattcctcctcctccaaacacggcgagttgagttgatgccaaagagctcgattttggtctcatctgaccacaacactttcacccagttctcctccctttaagagagtgctcctaatctcagctcgttacctgtataaaag

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36815 True 358 lncRNA 0.50 2 47038464 47038892

Neighbor

gene id symbol gene type direction distance location
AMCG00008226 NA coding upstream 507706 46530450 ~ 46530758 (+)
AMCG00008221 LOC102785565 coding upstream 907447 46124130 ~ 46131017 (+)
AMCG00008220 NA coding upstream 947471 46077307 ~ 46090993 (+)
AMCG00008219 NA coding upstream 969646 46039948 ~ 46068818 (+)
AMCG00008218 NA coding upstream 1126857 45867343 ~ 45911607 (+)
AMCG00008239 NA coding downstream 762206 47801098 ~ 47813090 (+)
AMCG00008243 slc35c2,LOC105890624 coding downstream 857026 47895918 ~ 47908312 (+)
AMCG00008248 NA coding downstream 916142 47955034 ~ 48001940 (+)
AMCG00008247 LOC107565828 coding downstream 976208 48015100 ~ 48030729 (+)
AMCG00008246 NA coding downstream 1003854 48042746 ~ 48067543 (+)
G29376 NA non-coding upstream 314569 46723633 ~ 46723895 (+)
G29372 NA non-coding upstream 503280 46534967 ~ 46535184 (+)
G29368 NA non-coding upstream 506555 46510384 ~ 46531909 (+)
G29358 NA non-coding upstream 559690 46478492 ~ 46478774 (+)
G29355 NA non-coding upstream 769475 46268675 ~ 46268989 (+)
G29404 NA non-coding downstream 373467 47412359 ~ 47412566 (+)
G29412 NA non-coding downstream 526449 47565341 ~ 47565553 (+)
G29417 NA non-coding downstream 538784 47577676 ~ 47578641 (+)
G29419 znfx1,LOC106583673,LOC107587633,LOC107744348 non-coding downstream 550621 47589513 ~ 47589814 (+)
G29422 NA non-coding downstream 560342 47599234 ~ 47599468 (+)
G29353 NA other upstream 770137 46267891 ~ 46268327 (+)
G29183 NA other upstream 1597400 45440513 ~ 45441064 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other upstream 1694550 45340574 ~ 45343914 (+)
AMCG00008185 NA other upstream 1866636 45147397 ~ 45171828 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other upstream 2002048 45023148 ~ 45036416 (+)
G29418 NA other downstream 541321 47580213 ~ 47586235 (+)
G29421 NA other downstream 556212 47595104 ~ 47595686 (+)
AMCG00008232 ddx27 other downstream 584060 47622952 ~ 47671421 (+)
AMCG00008238 hsp70l,hsp70.3,LOC105896343,LOC105896344 other downstream 625625 47664517 ~ 47716582 (+)
AMCG00008242 hsp70.2,LOC108441608,LOC105896344,LOC105896343 other downstream 824677 47863569 ~ 47892071 (+)

Expression


Co-expression Network