G29397


Basic Information

Item Value
gene id G29397
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47118637 ~ 47121378 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU36825
ACAGAAGCTTCCCACCGCGCTTGAAACTGCTGAACTTCTGTTCCATCACGTGTTCCACATTTATGGGATTCCTGAGGACATTGTTTCCAACCGAGGCCCTCAATTCACCTCCCGCGTCTGGTCTGCTTTCTTCAAGGCTTTGAATATTAAGGTGCACCATGAGAAGAATCCTTATCATTGTGATGTGCAACTCTGGTTCCAGGCTGATGCGGCTCTAAAGACGAATGAGCACGGGATCTTGTCAGTGAGAGAGACGACACCATCATCCCTGAGCAGAAGAACTTGATACATCTAGAAAAAGAAGCAGGACCAAATCAATTTCCCCTCAGTCTGCAGACTTCAGGAGGCTATCAGACTCACACCAGAATCATCTGAAAGCCCCTGCCAGCCATCACGTTACTTGTACACCCAGATCTATATCttcggaatatatatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36825 True 438 lncRNA 0.47 2 47118637 47121378

Neighbor

gene id symbol gene type direction distance location
AMCG00008231 LOC107681302,LOC107587604 coding downstream 1137 47092291 ~ 47117500 (-)
AMCG00008227 cdh22,LOC107681302,LOC107666158 coding downstream 50438 47046722 ~ 47068199 (-)
AMCG00008230 cdh22 coding downstream 105360 46981336 ~ 47013277 (-)
AMCG00008229 cdh22,LOC106565306,LOC107553911 coding downstream 154065 46957865 ~ 46964572 (-)
AMCG00008228 NA coding downstream 371079 46747193 ~ 46747558 (-)
AMCG00008234 ddx27,LOC107553908,LOC107681294,LOC107587605,LOC107744345 coding upstream 494475 47615853 ~ 47619787 (-)
AMCG00008235 snrpb,LOC108272150,LOC108250717 coding upstream 510952 47632330 ~ 47639937 (-)
AMCG00008236 elmo2,LOC106583331,LOC106565399 coding upstream 521601 47642979 ~ 47676750 (-)
AMCG00008237 NA coding upstream 596329 47717707 ~ 47742362 (-)
AMCG00008240 ssr1,LOC108424590 coding upstream 661923 47783301 ~ 47792521 (-)
G29383 NA non-coding downstream 184369 46931359 ~ 46934268 (-)
G29381 NA non-coding downstream 214415 46903792 ~ 46904222 (-)
G29377 NA non-coding downstream 394742 46723633 ~ 46723895 (-)
G29375 NA non-coding downstream 462071 46656234 ~ 46656566 (-)
G29354 NA non-coding downstream 850359 46267893 ~ 46268278 (-)
G29403 NA non-coding upstream 288409 47409787 ~ 47410050 (-)
G29410 NA non-coding upstream 409054 47530432 ~ 47530659 (-)
G29521 NA non-coding upstream 887279 48008657 ~ 48012955 (-)
G29530 NA non-coding upstream 906339 48027717 ~ 48030913 (-)
G29583 NA non-coding upstream 1173675 48295053 ~ 48297299 (-)
G29361 NA other downstream 636739 46480946 ~ 46481898 (-)
G29301 NA other downstream 1064291 46050695 ~ 46054346 (-)
AMCG00008192 NA other downstream 1890133 45149501 ~ 45228504 (-)
G28970 NA other downstream 2700441 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 3535224 43510760 ~ 43583413 (-)
AMCG00008233 NA other upstream 458761 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 545264 47666642 ~ 47918462 (-)
G29544 LOC100846954 other upstream 1002547 48123925 ~ 48124682 (-)
AMCG00008256 arfgef2 other upstream 1081243 48202621 ~ 48291443 (-)
AMCG00008255 NA other upstream 1289707 48411085 ~ 48418933 (-)

Expression


Co-expression Network