G29418


Basic Information

Item Value
gene id G29418
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47580213 ~ 47586235 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU36848
TATGGGCTGCATAATTTCCTTTAATTGCCAATGCAGCAATAATAATAGagtaaatattttcatattcaaaatGTTCCCATGGTTaagacagtgaaaataaatcaggcTTGATTCTAGCCAGCAGTTACAGTCAATTTAATTAGCTAGGTGCTGACAGGCCCAGTTTCATGATGCATGGATTGGGTTCAGCTCATGGAAAGCAACTGCCAGCAACAAGAGAATCACAATCTTGGTTCCTTGCTGCATGTGAAAAGGGTATTGACAAAGTACAACCCCTGTGTTCAAGTGTTGAGCGGACAAGCCAAAACTAAAAATGGAAGAAAGGGAAAACTGTGCCTTAGACGTCTATTCACACCCTCTCCATCCTTGTCACAGCTGGTTAACTCTTTTCCAATCTTAAACAGTTTTCACACTAAAGCAAACTGTGGGAATGCACAGGATCTACAGTCTACTTCCAAGCAAATCCATGTGCAGGTGGGAGTGAAGCCAGAAACCACTCCATCCAAAGTGCAGCAGAAACTCAGACATTATGTTCTGCATATGGGTATACATTTGTTACAGGTTTAAAAGCTTGAAActtgaaaaacagattttctaACAGCTTGAAATGTGAAAGTGGCAAGTCTAGCAAAGactcattttcagtttcaatttcagTCTGTTTCAGCTAGTCTTCCACAGGAGTATAGCTCCCTTTCTGGTGTCTCAGTGCTTTTCTCTCGTAGCTGTAGAAACAGCTACCAACCATCCCAGGTTAACAcctaatgtattaatgtaagtggattatttgtatttaagagGCACAGTGTAGTTTCAAACGGTATAGTGATTCTAACTGTCAAGCAAACTGTTGGATAAGCTTCAGTTCATTTCCAGAATGTAATGTCAAAATGCAAAGGATTCAAATAGCATGTGCAGAAAACAATTTGGAAGCCACTGCAGTATGTGTCCCCCTTGACagactgaaaataattatacGCATTAAAATTATATGAGATTATAGGACCATTGAACATGCagtgcattcattaaaaaagctaaagtttttttttttgtaccagTCGCATAGGACTTAAGTCTCCTtgcaaaaacattgtgtgaTCGCACATCACaaaaaagcaatttgttttaaacaactgAACAAAGGCCCAGGTCTCCTGActgaaaaaagcaaataaatgagCTATGtcttaaaaaacatgtattaatgttAGTGCATAGAGTTTTACATTTCACCTTCAACCAATCACAGAGCTGTAAAGAAGTAGCTTTGTTTCCACTTGCATTTTACAGTTAGAAtacctttgtttttgtgtttatttaacatgttttatcaTTATCTCTCTCAGTCTTTGCTGCTTTCAGCACTGGCTATGCAACCAAACTATTCCAGCAAATCAACTACAGAATTAGTCACTGGTATCCTTCCCCttctttgtaattgttttctggagtagttaattaattataatttgcatGAGGTATAAGAGAGGAGAATCAAGCTTAAACAAGGTTCCATctaaatatactaaatatgtttaaaaaaaagtaacatttctgTGCATGTAAGCCTATTTAACTATCTTGTTGTTGATTATATAATATCTCCCCGATTTCtgaattcaataaaatacagtagaGTAAACTTGTAATTGCTTAAACTACCATGAAGTTGTTTAATCCTCATCAGACCAACCATTCATTGACAGACTGACTTGGTGTGCTATTTGCTACGCAGTACAGTGACTGATATagaagggggaggggaggcacTACTGTAGCTAACTGTATTCTGCCAATTCTCTTCATTGATTGGCCAATTAAACCCTGGCCAATCAATCAGCGAGCATCGATGGCCTCAAACAGGGGCGAGAAGGCTGTAGCACTTAGCTAGCAGCACAAATGGTAACATTGATTAAAGACAGCAGAGTTAAGCCAGGAAACAACTGTGTCAATTATAACAATTGTTGTAGAAAAGCAGCAATCATTCATAATCATCGGGCTGACCATAATGCATGCTGAGCCAACTGTGTTATATACTGATAAGATGGTCTTTTTCACAACAACTGGGTTTCGCTGACAGATATGAATGTCAGAGTTCTCTTTTGTCCTATTGAAGCACATGTTCTCTAACCCTGGACCTGGAGACCCCCTACTTCACTTCATATACAAGAGGGCACTGATCTCATGCACCCAAATGCAAGGGCAGCCATCACAAGCATTGCTCCTGATTTCATGAAAGCAAGTGTAAAGGCAGAAAgggtaaaatctaagcagagaCAGGCAGGAGCTAAATTTCAACTGTAATCAATCAGTTTCATTATTAGAAATATGGTCTCCATCTTATTTTACTGGATATTGTGTCATCTGTAAGTATTAAACCACCACTGTTGGCTAATGTTATTCTTCAAAACTTTGCCAGGATGTGAAAAGGTATAAAACCCCAGAATTAAGTGCTAGGACTTCTGGGGCAGGCTGAGACATTAACAAgccaaaaatgcattaaatccatgaagaatatttttatatataagtaaTAATCAGAATTAATGTATAAgaatattcatatacatattataacaTTAATCATAATGAAGCACAGAGATAAGGCTGCGGCCAAGACTGACAATTACTAAGAACTTCAGTTACATAATTCATATACTGTAAGGGGTTTCAATTAAAATCTACATTTCAATCCTAAAGGCTAAAATCcataattcagttttgtaatttattactTAATCTACGatatcaaataatacaaatcagcaGTGCACAGATGTGATCATAGATACATTTCAGTAGTTTTTCTAGGGCCATAAAAAGTTTGACCTAAGAACGAATCGCAATGTACAATCCTGTACCTCATTGCATCTTAATTTATAAGTAGTTGAAAGTGGTTTCAGACCATTTAAACTACAATAAAGTACAGGTTTAcctttttgcttttacttttgtGATTTGCAGGTAGTTCAAAGTTGACATTTTGACAAACCCTAGGTCTGTTGAACGTATCACTAACTTGGAAGACCAATGACTTAATTAAGTCCCTTGGCCCTTGagaactgcagctgtagatatCGATGCAGAAACCAATCATGTCTTTGATCTCAGTCAATGAGTGGTGTAGCATCTTATTGGTGGCATTAGTACATTTTATCACAAGATCCCTGAAGAGAAATCCATCacagaaacattacaaatgtcTGGCTGCAAAACTGAGACAGCATTTACAAACGTGAGTACAGAGCGGAGTATAATTAGTGCAATCAAGTCACTGCCTCATTTCTATCTACTTTTTATAGTCCTCCCTCATTATAGCACCAAGGACAGGACAGGCACTAAAAGTGGCAGTAAGCTGAGTTTGTATTATAAAGTGGAGATGTATTGAGAGAAACAAGCATACACTGAGACCAGATCACTCAAAAGAGGGAAAAGTGgtgattagatttttttctaaGGCTTAAGTAGTTGCTAACTATTCAAATAATTCCATGTAGGGCTGCAGCGTTCAAGGTTCATTCTTCtccaaggaaacaaaaataaaaaacctgagCAAATCCATTCCAAGTCCACTGCCTGCTCACAGCCTCAGTCTCTCCATGTCGTAGTTGAGCATGTTGGCGGCGTCAGACCAGGCAGCGTGGCGAGCCCCGTCCATCTCTGAAGCCAGCTGGTTGCCACTTGCCAAGGCGTGGTTGGCACCGCCGATGACAGCCTTGCACTCTGGGCATTTTTGCGTTTCCATGGCCCCCCCGCAGTCTCCAATGGCATAGACGTGGCCATTGGGGCACTTGTACCAGTGCCCTTGTGCCAGCCCCATGGCCTTGACGATCATCACCCTCTCTTTATCTGAGATGCCCAGCCCGCTGCGTGGCAAATAGGCGTTCAGATCCTCCATGGCCTTCTGTGCCCACTGCTCGTCCTTTTGTGTGAACGGTGTTGTGCCCTCCAGCCCCTCCCTGAGTGTTGCCACTTGCAAGTGAACGGTGGCCCCCAGCTCCCTGTTGCTTGCCTGCTTACAGCGTGCGTTCAACTCTGCCAGGTAGGTGAGCCTCTGGATCTCGCTCTGCAGGTCTGTCGCCTGCTGCTCAGAGAAGCTGAGGTCCGGGCACTTCAGCCACTCCATGCATTCGACAATGCGCTTGGAGAATTGCAGCAGATCCTCACTCAGCATGTCCTTCTCCGCCTTCTTCAACTTCCCCAAGCGCCCGTAGAAGGCAATCTTGTTCTCCAGTATCCCCAGTGCCCTCAATGACAGCCCACCCTCCCCTAGCTGCCCCTTGAGCTGCTTGTATTCCTCCGGGAGGTAGAGGTGGAAGGCCACCTGTTCCTTGAGGAGGCGCACGAGGGCCTTCTGCTTCTTCTCAATCTCCAAGGGTGAGCCGTGGAGCCGGGCTTTCACCTTCTCAATCTCGGCCAGGCTGCGGTTGATGGCTGCCCCATAGCGGAGGTTCCTACGGATGGGTGTGCGGCACTTGGGACACTCCTTAAGCTTGATGGCCATCAACTCTAGATCTGCCCCTGGCTCTTTGTCCATGCTCATGTAGTGGTCCATGCTACTGGTCTCCAGAAAGTGGCTGCAGTCCTCCAGCTGCACGAAATATGCCAATGGTTCATCCTCCATGCCAAAGAAAATTTCGGTCACCTCATCCTGATTGCAGACACGGCATTTGTCAGGGCAAGGATCCCCACAGAGCCCGATACAGGGATGCCCGCAGCCCAGGGCCTTTCCGCAGGGCTGGTTACAGGGTGGTCGATCGCAGGGTTCGTGGCACAGCTTAGTACAGCGGAAGTGAGGGCACTGCCAGGCACAGGGCTCCACACAGGGGGCACACGGCTGGCCACAGATCTTCTTGCAGGCACTGTGCACGCAGCGATTCTGGCAGGGCAGCTGGCATGGTGGGCACTCTTTGGTACAGGGTTCTCTGCACACGTGGGAGCAGACGAGCAGGCGGCCACAGGGGAGACTGCAGCCCTTATGAAAGCGGCCCTGGTGGCACCAGTGGCAGGTGCCTGGGCAAGGGTGGTCACATTTCAGTTTCTCACTGCATTTGACTCTACAAATAGCCCCCTGCCCTGTCATTTGTCTGGTATAGTGACAGGCATCCTCCTGCTGATGTCCACACTGTAGCTTCATAATCACTCTAACCTGGCAGCGGGGGGTACAAGCGTCACCACAGACTGAATCGCAAGGGTGCCCGCACCTCAGCTTCTTACTGCAGGGCTCCAGGCAGATGAAATCAAGTGGGTCTAGATAGCAAGGCACCTTCTGGTTGTGCCCACAGTAGGGGATCTGCTTCTCCACTCGAACTTTGCACTCATCACACTCCTGAAAGCAGAGCCCCGGACAGCGGTGGCCTAGCTCACATAGAACCTTCTGGCAGGGCTTGAGGCATTGGAACATCTTGTGATCGGCATCGTAGGGGTGGCAGGCGCGGGTGCAGACATGGCCGCACTCCAGACGGAACTCGCAGGGTCGGCTGCAGCCCCCTTCGGGCGCTTGGAGGAAGTCCTGGGCACTGGAGACCATGGCGCGAGTGCCAGGGTGATTCTGGCAGCACAGGATCAGTCCGCTGCCCACCTGCCCTCTCTCTCGCAAGGTGTGGAGGATGTTGCTCCACAGAGAGACCTTCCCGAACATGGCCATGTTGCCGATGCAGTAGAGGCCTTTCTTGGCGCGAGACAGGGCCACACAAACACGGTTGGCAATCTGCAGGAAACCCACACGCCCCTCCGGGTTGCTGCGCACCAGCGACAGCAGGACAATGTCATTCTCCTCACCCTGGTACTTGTCAACCACATGGACCTTCACCCCAGAAAACTGGTTGGCGGGCAGGAGCTTGCGCAGGCAGTGCAGTTGTCCGGTATAGGTGGTGAGGATGGTGATCTGAGAGGGCTGGTAGTCCTGACACATGAGGTAGCGGCACAGAGCCACCAGGAAGCAAGCCTCGTGCGGGTTCTGGTGACTGCGTCCATCCTGGATTTCCTGCTCAGGGAACTGGTGCTCCACAAAGAAGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36848 True 6023 TUCP 0.46 1 47580213 47586235

Neighbor

gene id symbol gene type direction distance location
AMCG00008226 NA coding upstream 1049455 46530450 ~ 46530758 (+)
AMCG00008221 LOC102785565 coding upstream 1449196 46124130 ~ 46131017 (+)
AMCG00008220 NA coding upstream 1489220 46077307 ~ 46090993 (+)
AMCG00008219 NA coding upstream 1511395 46039948 ~ 46068818 (+)
AMCG00008218 NA coding upstream 1668606 45867343 ~ 45911607 (+)
AMCG00008239 NA coding downstream 214863 47801098 ~ 47813090 (+)
AMCG00008243 slc35c2,LOC105890624 coding downstream 309683 47895918 ~ 47908312 (+)
AMCG00008248 NA coding downstream 368799 47955034 ~ 48001940 (+)
AMCG00008247 LOC107565828 coding downstream 428865 48015100 ~ 48030729 (+)
AMCG00008246 NA coding downstream 456511 48042746 ~ 48067543 (+)
G29417 NA non-coding upstream 1572 47577676 ~ 47578641 (+)
G29412 NA non-coding upstream 14660 47565341 ~ 47565553 (+)
G29404 NA non-coding upstream 167647 47412359 ~ 47412566 (+)
G29387 LOC107575789,LOC100846954 non-coding upstream 541321 47038464 ~ 47038892 (+)
G29376 NA non-coding upstream 856318 46723633 ~ 46723895 (+)
G29419 znfx1,LOC106583673,LOC107587633,LOC107744348 non-coding downstream 3278 47589513 ~ 47589814 (+)
G29422 NA non-coding downstream 12999 47599234 ~ 47599468 (+)
G29423 NA non-coding downstream 14585 47600820 ~ 47601101 (+)
G29424 NA non-coding downstream 15983 47602218 ~ 47602686 (+)
G29425 NA non-coding downstream 18905 47605140 ~ 47606425 (+)
G29353 NA other upstream 1311886 46267891 ~ 46268327 (+)
G29183 NA other upstream 2139149 45440513 ~ 45441064 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other upstream 2236299 45340574 ~ 45343914 (+)
AMCG00008185 NA other upstream 2408385 45147397 ~ 45171828 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other upstream 2543797 45023148 ~ 45036416 (+)
G29421 NA other downstream 8869 47595104 ~ 47595686 (+)
AMCG00008232 ddx27 other downstream 36717 47622952 ~ 47671421 (+)
AMCG00008238 hsp70l,hsp70.3,LOC105896343,LOC105896344 other downstream 78282 47664517 ~ 47716582 (+)
AMCG00008242 hsp70.2,LOC108441608,LOC105896344,LOC105896343 other downstream 277334 47863569 ~ 47892071 (+)
AMCG00008241 LOC106596195,LOC106601018,LOC105896344,LOC105896343 other downstream 327633 47913868 ~ 47918128 (+)

Expression


Co-expression Network