G29424



Basic Information


Item Value
gene id G29424
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47602218 ~ 47602686 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU36854
GGAAAggcaggtcttcctcctgcATCTCCTGCAGCCCCTCCAGGACATGGCGATAGGCCTCGAAGTAAGCGGTGGTCTCCACCATGAGGAAGGAGTGAGAGGCCTGGACCTCCGCCAGTGCAGGCCGGCTCTCCCTGCAAAAGCTGAGCTGCACCACACCCTTGGACAGCTCTGCGGGGTCGCGATCAGACACAGTGGCAAACAGGAAGGACTCAAAGTTGTCCCGGGACATGCAGACCAAAGACCCATATAGCAGCCTCTTGGAGTTCTGCCAACGGACAAACTGGGGGGAGAACATGGACAATAACAAAGAAGcaataagaacatcagaaaacaAGGaaggttacaaacaagaggaggtaATATTTGGTCTATCTTGTTAATCTGTTTCCTGATAGTTTGGAATCTGCTCAATTTGGTTTTTATATGTGGCAGGGAACCTGGGTTCTGGAGGGCCGCAGCACTGTAG

Function


GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

RNA


RNA id representative length rna type GC content exon number start site end site
TU36854 True 469 lncRNA 0.52 1 47602218 47602686

Neighbor


gene id symbol gene type direction distance location
AMCG00008226 NA coding upstream 1071460 46530450 ~ 46530758 (+)
AMCG00008221 LOC102785565 coding upstream 1471201 46124130 ~ 46131017 (+)
AMCG00008220 NA coding upstream 1511225 46077307 ~ 46090993 (+)
AMCG00008219 NA coding upstream 1533400 46039948 ~ 46068818 (+)
AMCG00008218 NA coding upstream 1690611 45867343 ~ 45911607 (+)
AMCG00008239 NA coding downstream 198412 47801098 ~ 47813090 (+)
AMCG00008243 slc35c2,LOC105890624 coding downstream 293232 47895918 ~ 47908312 (+)
AMCG00008248 NA coding downstream 352348 47955034 ~ 48001940 (+)
AMCG00008247 LOC107565828 coding downstream 412414 48015100 ~ 48030729 (+)
AMCG00008246 NA coding downstream 440060 48042746 ~ 48067543 (+)
G29423 NA non-coding upstream 1117 47600820 ~ 47601101 (+)
G29422 NA non-coding upstream 2750 47599234 ~ 47599468 (+)
G29419 znfx1,LOC106583673,LOC107587633,LOC107744348 non-coding upstream 12404 47589513 ~ 47589814 (+)
G29417 NA non-coding upstream 23577 47577676 ~ 47578641 (+)
G29412 NA non-coding upstream 36665 47565341 ~ 47565553 (+)
G29425 NA non-coding downstream 2454 47605140 ~ 47606425 (+)
G29431 NA non-coding downstream 10815 47613501 ~ 47615931 (+)
G29546 NA non-coding downstream 533783 48136469 ~ 48136724 (+)
G29612 NA non-coding downstream 812317 48415003 ~ 48419063 (+)
G29615 NA non-coding downstream 826289 48428975 ~ 48429218 (+)
G29421 NA other upstream 6532 47595104 ~ 47595686 (+)
G29418 NA other upstream 15983 47580213 ~ 47586235 (+)
G29353 NA other upstream 1333891 46267891 ~ 46268327 (+)
G29183 NA other upstream 2161154 45440513 ~ 45441064 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other upstream 2258304 45340574 ~ 45343914 (+)
AMCG00008232 ddx27 other downstream 20266 47622952 ~ 47671421 (+)
AMCG00008238 hsp70l,hsp70.3,LOC105896343,LOC105896344 other downstream 61831 47664517 ~ 47716582 (+)
AMCG00008242 hsp70.2,LOC108441608,LOC105896344,LOC105896343 other downstream 260883 47863569 ~ 47892071 (+)
AMCG00008241 LOC106596195,LOC106601018,LOC105896344,LOC105896343 other downstream 311182 47913868 ~ 47918128 (+)
AMCG00008249 NA other downstream 326981 47929667 ~ 47941754 (+)

Expression



Co-expression Network