G29544 (LOC100846954)


Basic Information

Item Value
gene id G29544
gene name LOC100846954
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 48123925 ~ 48124682 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU36999
tacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagtctataattttaatggtgggtgtattttaacagtgagagacagaataacaacaaaaaaatccagaaaaacgcatttcaaaaaaagttataaattgatttgcatgttaatgagggaaataagtatttgatcccctatcagtcagcaagatttctggctcccagatgtccatcgccaagcagcttggtgagaaggtgacaacagttggtgcaattattcgcaaatggaagaaacacaaaataactgtcagtctccctcggtctggggctccatgcaagatctcacctcgtggagtttcaatgatcatgagaacggtgaggaatcagcccagaactacacgggaggatcttgttaatgatctcaaggcagctgggaccgtagtcaccaagaaaacaattggtaacacactatgccgtgaaggactgaaatcctgcagcgcctgcaaggtccccctgctcaagaaagcacatgtacaggcccgtctgaagtttgccaatgaacatctgaatgattcagaggagaactgggtgaatgTGTtttggtcagatgagaccaaaatcgagctctttggcatcaactcaacataccgtgtttggaggaggaggaatgaccccaagaacaccatccccaccgtcaaagatggaggtggaaacattatgctttgggggtgtttttctgctaagggaaC

Function

NR:

description
transposase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36999 True 758 TUCP 0.44 1 48123925 48124682

Neighbor

gene id symbol gene type direction distance location
AMCG00008244 sys1 coding downstream 236626 47882297 ~ 47887299 (-)
AMCG00008240 ssr1,LOC108424590 coding downstream 331404 47783301 ~ 47792521 (-)
AMCG00008237 NA coding downstream 381563 47717707 ~ 47742362 (-)
AMCG00008236 elmo2,LOC106583331,LOC106565399 coding downstream 447175 47642979 ~ 47676750 (-)
AMCG00008235 snrpb,LOC108272150,LOC108250717 coding downstream 483988 47632330 ~ 47639937 (-)
AMCG00008258 LOC100703625,LOC102206431,LOC101476705,LOC103360233,LOC102296182,LOC105026470 coding upstream 359713 48484395 ~ 48643942 (-)
AMCG00008257 NA coding upstream 549846 48674528 ~ 48697834 (-)
AMCG00008260 NA coding upstream 713466 48838148 ~ 48839345 (-)
AMCG00008259 NA coding upstream 735473 48860155 ~ 48861604 (-)
AMCG00008261 NA coding upstream 1019491 49144173 ~ 49169545 (-)
G29530 NA non-coding downstream 93012 48027717 ~ 48030913 (-)
G29521 NA non-coding downstream 110970 48008657 ~ 48012955 (-)
G29410 NA non-coding downstream 593266 47530432 ~ 47530659 (-)
G29403 NA non-coding downstream 713875 47409787 ~ 47410050 (-)
G29397 NA non-coding downstream 1002547 47118637 ~ 47121378 (-)
G29583 NA non-coding upstream 170371 48295053 ~ 48297299 (-)
G29595 NA non-coding upstream 207426 48332108 ~ 48332942 (-)
G29656 NA non-coding upstream 440985 48565667 ~ 48653934 (-)
G29673 NA non-coding upstream 607578 48732260 ~ 48732591 (-)
G29676 NA non-coding upstream 637290 48761972 ~ 48762297 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other downstream 205463 47666642 ~ 47918462 (-)
AMCG00008233 NA other downstream 516913 47580139 ~ 47607012 (-)
G29361 NA other downstream 1642027 46480946 ~ 46481898 (-)
G29301 NA other downstream 2069579 46050695 ~ 46054346 (-)
AMCG00008192 NA other downstream 2895421 45149501 ~ 45228504 (-)
AMCG00008256 arfgef2 other upstream 77939 48202621 ~ 48291443 (-)
AMCG00008255 NA other upstream 286403 48411085 ~ 48418933 (-)
AMCG00008264 NA other upstream 1051043 49175725 ~ 49253244 (-)
AMCG00008273 gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014 other upstream 1372718 49497400 ~ 49537281 (-)
G29928 NA other upstream 1671289 49795971 ~ 49905089 (-)

Expression


Co-expression Network