G29813


Basic Information

Item Value
gene id G29813
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49344038 ~ 49348022 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU37309
TAAAAAAtcttgacatttaatttattttcacatggcACATTTATACGCCATAAATCCTTCTACAAGAAGGCAATGTCCAGGTTTAAGATAAGGCACAATCTCATTCATAAAAGAGGAAAATCGTTGAAACTACAGCATCCTAAACATAATAGAACAGTCTTgtcaattacatatttatatccAAGTCTATACATCACTAAAGCAGTATTTGTTTCCTCCGATTTAATTTTGGAATATACAGACCACCCTGACAATTAAAGTAGGTCTCCAGCATTTTTCCGCATGCGTAAAGCATCAGTATCCCGTGGAATGCATTCCATATATCAGTATTGTATTccaattgtataaaatatatcatCCCACCTCAGacaattcatgtatttaaaggTTTACTATATCCATAGTTCCATTAGAAGTAACCTATCTACAGGTATAAGTAATGACATATATTctcatctatatatatatatatatatataagcaaatataattaatattactcggaatgtaaaaaaaaaaatcatgcaaaAGACAATCATGTTAAGACAGCAAAGTCCCatggaaaatgtgtatatttattattaacaatagGAAAAATACTTTAGATTagatgtttaaaaagaaaaatatatttgaatgcttgattattgtatatgtatacatatatttgtgtgtgtgtttacagaaaaaaaaaacttttatacttaaataaataaaacagaaatacattacaaaaaatgatttGGGTTGTTATGACAGTTTGTACAAATGCAATAAAGATTTTTTgttagaataaattaataatagctCAGGGCATTGTTAAAGACAAATTCAAATTTCAACCATTAATAGTATTAAGGCCTAAAGCCATAGTGGGCAGCCCATGTACTGTTTTGTAGGTCTATTGAAATCCACTACCTGGAAACAATGCTTAATTTTCCAAACAAGTGGCTTGAAATAAATTGAGAAAACCAAGGAAGGGTAAAACAGCCAGCTAAGCACTGGGCATAACATTACTACTGCATCAACATGTAGAGATGTAAAGATGACCATATAACATGAGATCagttattttctaaatgtaaacTTGTATGGCCTGAATTTCCCTATGAGTTACCCTTCTGAACTTCAATTATAGaggtaaaagaaacaaaaaacacaaggaaCTGAACTGGCCATCCAAAATGCCTGTAGTACATCAGTTCAATGTAATCCCTGCTGATTTACAGTGTTCAGTTTCATCAGTAGAGTGTTAGGGAAAAGAAGCCTGGCAGCAAACTTGTACGATCAGCAGAAAAATGGACAGACTATGTCACTGTCAACTGCTTTCCTACCATCTGGTGgtacaaacataaatatatattaatttctcCCCTTTATGCTCTGTACAATAAATCTCTATACCATAAATTAtttatacagcctttttttctccactgtgccttcctttaaaaaaaaaaaaataataataataataataaaaaaaaaaaaaaatatatatatatatatatatatatatatatattgctccCCCTGCCCTTGCAGTTAAATGGCTTCTTGCTTGGTTATGGTGGATTGAGGAATAGAGACAGGCTGTTTGGCAATGGTGGCTATCACCCCCTGGGTCATCTTGTACTGATCTGAGCTGGAGCCTGCTGGGGGAGAGGGAAGTGGTGTTTCAGGAGTAGCTGGAGAAAGAAAAGTGAGAAACAGGCcatggaaaaaactaaaatcagacAGTTATCTTTTGTATGTTGCCATCTCCTAAACTGTCTCCTACACAGAGCCCAGCCATATTAAAAGAAGCACTCCCCCAGAGCCCCCCTGGACACAGTGCAGCATTCTGACAATACTTCCCGTCCCTGGAAGAAAGACAGACCCTCCAAATGTCAATGGCAAGCTAACAGATTGTGTTGTCATACAGTTCATATTATCTATGGGTTATGGTGGCTCATTTTATGTGGAAGGGTTCAGATTGTGTTGTCATACAGTTCATATTATCTATGGGTTATGGTGGCTCATTTTATGTGGAAGGGTTCTGAAGGTTGGGAGGCATATGCACAAAGCAGGAACATTTTCCTTTGGTTGACAACTTAATGTGAGACAGGCTGTGGTAATAAAAGTGCCTTACAGACACTCTCTGGGGCAAAATGAGCTGCATTGTATTATGTCACCACTAATGCATTTTTCAAGGATTACaccaggggtggccaaccctgttcccagagagccacaatcctgtgggttttccaggtctctcttaatAAGCAAtcaatggataccttgaacacagggacattttgcctaattaagacccgcaattggttaaattaaacagttaacaatctggatagaacaaaaacctataggccctgcagctctccaggaccagggttagccactcCTGGATTATACCATTGACTAATGGTAGCTCATTTAACTTTGGTCATATTCACTGAATACTATGaaggaaattaattttgtattaaggAATTGTCATCTTTggatgtttatacatttaaacatgacatttgaaatgaaaagctatAAACCTACATGTCTGTAATCTGGAAGTGCTGCcagaacaatacatttcaatgaaatcataaaatatGAGCTTAGAAGCTGCTAAGTGAAGTGACAGAATGATTGAATGACACATTAGAatccattataaaaaatattataattataatagctTTACATATGCTTTAGACATGGCAAGACATCTAAACTTTTGCCACTTCCACTTTCCCACAAGAGAGTTCTTGCATGCTATGTATCAAATCTCATTtgcaagaaaaaactaaaaactgctGTGAAACCCCAGTTCAATTTCCAAAGGCATTAGCAAATATTAAGAAAGAATAACAGAAGTTTGCTTACACAAAATCAGCCCTTTTAATCTTCCTGCAGGATAAAGCAGATTACACTGCCAATTCTTTTGATGCTTTCATGGCCTTTTTTTCTGTCGCACTCACATAAAGTGGATCAGAATAAGGAAAATCACATCTTTGATTCATGAATCCATTTGTGCAAAGAGCTTACAGGGAAGAACTTTGCATATAGAGTCTGGCTTGAACAATGCTTGGCGTGTGCAGTGAACTTACAGATCTGGCCGTTATGAATAGGAGTTGGCATGTTGCTGGTCACGATGACATTGTTACTGAGGTGCTCCTGAACCAAATGGGGGTGCAAAGTGTGAGGCGTGTGGGGGGCTTCATTTGCAGAACCTGAAAGCAAGAAACAATGCCTTTAAATCACCACCAGAACTACGAAGCCAACAGAGTGATGAAAAATCAAGGCTTTGTTGCACTTAATTAAACAGACTATGAAAAAGGGGAAATCTCCTGCAAACCTAGTTTCCATTCATATAATTTTATCAAAAGGGTGCTATTTTTAGTGTTCAAGAAGGGATATATTACATGTCAGTGGGtccattaaaacaaagataTGAAGCCTGCAGTAGTAGTCAAAATTTACTTTTCTAACTATGTGAATGGTTGACTTCCTTACTCCTCGTGTTATTTGTTTCCCTCTTCATTTAATATTGCACTGGTGAGAACTTGAAATatgtttatcaattaaataaataaataaatcaggaatAACCAAAAGACTTGtgtaacataaaacataacataaaatacatattgttactTATTCAGTAATCTCTGTAATTCCTGGTTTCCTGGTTACAGTATATGAAAAGGGCTCGACTGAGACTGAGTGGAACTTTACAACTTGAAAGGCAGGCTGGTGTCCAAAGCACAGCATGATATTTGGTCATGGCAGCACAGCATGGTTTATTGCCTCCGAGGCTGATCTGTGCTGTTAGATAAAAGCACATTAGCAGTGCATGAATCACAAGCTGCGTGTGACACCCTTGAGTACATGCATCTCTTATCGGGGATTTGAGATATGACAACCTTTCAC

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU37309 True 3936 lncRNA 0.36 2 49344038 49348022

Neighbor

gene id symbol gene type direction distance location
AMCG00008262 stk35,LOC105016730,LOC106583621,LOC103372836,LOC104935842 coding upstream 403943 48923864 ~ 48940095 (+)
AMCG00008250 NA coding upstream 869506 48462293 ~ 48474532 (+)
AMCG00008253 stau1 coding upstream 967967 48347747 ~ 48376071 (+)
AMCG00008252 cse1l coding upstream 1017900 48292639 ~ 48326138 (+)
AMCG00008251 arfgef2,LOC106532188 coding upstream 1068690 48235687 ~ 48275348 (+)
AMCG00008272 NA coding downstream 121267 49469289 ~ 49471615 (+)
AMCG00008280 jph2,LOC107707015,LOC108275945 coding downstream 201884 49549906 ~ 49560080 (+)
AMCG00008281 NA coding downstream 239045 49587067 ~ 49596793 (+)
AMCG00008283 NA coding downstream 531957 49879979 ~ 49881352 (+)
AMCG00008291 NA coding downstream 1010965 50358987 ~ 50359865 (+)
G29747 NA non-coding upstream 151822 49137516 ~ 49192216 (+)
G29748 NA non-coding upstream 196813 49139140 ~ 49147225 (+)
G29742 NA non-coding upstream 238594 49105213 ~ 49105444 (+)
G29722 NA non-coding upstream 376818 48966956 ~ 48967220 (+)
G29692 NA non-coding upstream 523344 48820475 ~ 48820694 (+)
G29823 NA non-coding downstream 20623 49368645 ~ 49379374 (+)
G29848 NA non-coding downstream 167462 49515484 ~ 49938346 (+)
G29853 NA non-coding downstream 196340 49544362 ~ 49544731 (+)
G29877 NA non-coding downstream 448422 49796444 ~ 49797983 (+)
G29883 tp53rk non-coding downstream 489983 49838005 ~ 49839324 (+)
AMCG00008270 ttpal other upstream 48679 49288246 ~ 49295359 (+)
AMCG00008263 NA other upstream 173021 49163816 ~ 49171017 (+)
AMCG00008249 NA other upstream 1402284 47929667 ~ 47941754 (+)
AMCG00008241 LOC106596195,LOC106601018,LOC105896344,LOC105896343 other upstream 1425910 47913868 ~ 47918128 (+)
AMCG00008242 hsp70.2,LOC108441608,LOC105896344,LOC105896343 other upstream 1451967 47863569 ~ 47892071 (+)
AMCG00008271 NA other downstream 56834 49404856 ~ 49418746 (+)
AMCG00008279 NA other downstream 491490 49839512 ~ 49858576 (+)
AMCG00008288 ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 other downstream 974691 50322713 ~ 50356404 (+)
G30166 NA other downstream 2078559 51426581 ~ 51428055 (+)
G30232 NA other downstream 2752740 52100762 ~ 52101524 (+)

Expression


Co-expression Network