G29928


Basic Information

Item Value
gene id G29928
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49795971 ~ 49905089 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU37452
TGTAATAGATCTACATTCTGCATATTTACAAATTGTCATGCAATAGGCTGCCAGTGATAAATTAAGGATTCCATAAAAATGGGTTAGTCCACGAATCAGAAGAAAAAGCTGTGGCAGCTATAAACTCGTCCCATTTCTGAACTGTGCGAAACGGGTAAGGATTGTGCTActtttggttttatatatatatatatatatatacaatcctTACCAGTTTCGCACAGTTCAGAAATGGGacgaatatatatatgatttttaactagtgcttttaaaatatcttgCAAATGTTAATGAACAGCATTTTGAGTGATATTTTGAATACGAGTGGGTGCATTTGGTTTTTAGTacgatgtgtttgttttgcatgcttcatggttttattttaagtcaatCTAAAATGTTATATAACCAGAGCTGGGGCActgctttggtttgttttaaattaatggcaagggatattttacaaaaatgtggACTAAAACTAGCAatcttctgtattttattttagtttcgtGGGTATATGTTTCCCGCCCAAAATCTGGTTTGTAATTGTGAGCCTCagtttatgtgtattttgtattgccttttcttattcttttgtGGAAAGACCCTGAGAtgctgtgattttgttttgtttcagatgtATGCATGACGGCTGAGATTCtttctgctttgtatttttgtgtttgtccagaATAAACCATCAGAGCATAATCACTTAGTGGACGTGATTTTTAGACGCAACGCAATCTAAACTGTACAGGAGTTGTGGGATCAGCCGACCAGACAAAGGCTGTTACAATAGCATTGGTCTTTTGTAATATACAAAAGACATCCCCATTTTAATCCAGATCTTCATCCTCTTTGAtaatctgtttgtgtttagGAACACATTGCCAGTGTGGaagtaaagttagaaattccccacacaaatggtttacttcatgtatactcaagaaagataaggtcaagtcaacagccaggccagaaggtagtttgacccctgtttgttatttcgatgagcatcttggagacaaACTGTATGATTTAAGTGTCTGCTCCTTAATCCTTGTATTGACCCATGGACTCTGTCCTCTtataatatattctgcttagcaagcttttaagataacatagtaatgacttattaattgtaaccagatctttgttttctgtgtttaaaaagctctgacttttaACATTGAGGAAGAGCagctttgggatcttcttgattcaccgctgttctccacgctgcgtgtattaaaggcattgcaacgagcgttccaacctgattgaagatgattgttcttccacCTTACATGGCGACGAGGATCGGGATCGCTAACCCTGACGGAGGACCGGAGTGGCCAGACCAGCCGCGCCGGCAAAATAATAAGctgtccattcacaggTAAAAGCAGTCCAGACTGAACCAGCCCAGCAGGATTGTCACCCCTTCCAGCCAGGTGACTACGTGTACATCAAAGtacacaaaagaaaatcctcCCTACAGCCCAGGTGGACAGCGCCCTATCAAGTGCTACTGACCACCCACACCGGTGTGAAGTGCCAAGGAAAGACGACATGGATCCACTCCTCCCACTGCAAACTTGCCCATCAAAGTGATCAGCACAACTCTGGTGGAGACCAGAGGGATGCTCCACCTTTGCCTGGATCCTCTTCCTCATCGCCTGCGGGACCATCATCTGCGCCATAGTAACCTGGGAAGAGGGCGCCTTCAACTCCAAGCTGACAGGATCATCGCTGACTGGGGAAGCCAGTCCAGAAGAAGCTGACATCGTTGTCACCCTCCAGCTATCAGCACAGGGCCAGAACAGTGGCCCAAAAGGAGCAACAGGATGCACGGGTCCACAAATACTGGGTGACGTGCTAGTAACCTCTCCCCTTTCGCATATTGACATCACAGACACTAACATGTACACTGATAAAATACGACTGAGGATTCGACAGCGACAAGACAGCCACCTGACCAGAGGAAACGCCTACCTCCAACTGTCTTATCAGTTTAcaaaagacttgaatcaaaATGCTGGGTGTGTTCACATGTGCCCCATAATGCTGAGGGAGGCATTCCCATTATTCGGGTTCCCTTGACTGCGGAAGATAACTGTGCTATATTGACTACATCACCCCCGCCATGAGATCTCTTTCAAAACCCCTAAGGGCCATAACGTAATCAAAGAGATATCTCTGAAACTGAGCGTTTCTTTTCCATATTGATCTCCCCATATGGTGTTGGGTGCTCTATACAGGAGGTTAAGATACTGGCCTCAATCGTAGAGGAGATTAGTAATAAAACTGCAGAATCTATAGATGACAtaatgtagcgtaaggtacacttataaatttcaattaaagaagtgaatttatagtatcacctt
>TU37454
NaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtaaatagtaataatacatattgataaatataacttGAATACATGTCTCATTCGAAACTAGGATcaggagaaagaacagctgttggGATGCAGAGCAATGTTAACCAAAGTTGAATAAGGTTTAAGAAAGTTGATGAGTTTTAGAGTTGATACGGCTTAAAAGGTATGACTTAATGTAACCTAAATAATTTAATGAGACATAGTCATGGCCagtttaaagtaataaaaactgTATGGAAATAGTCCTTTCGAAAACAGAAATACCCTATCAATTAGGAAGAGGGGTACAAGGGCAGTGACATTGTGTGTTCCTCTGCTCCCCCACTCGCCTTTCAGATAAGCAGCCTGAGatgactgtgagagagagagagagaaggcagagACTGTAACTATGTGTAAGGGTTCAAAACTTACTATAGAGCTAGAGTGTCATAAATGGTAATTTACACTGCTTGtattgataatgataataacattgATGTTGATACAGAAGAATAAGGCACATACTGGATGAAAAccactttataaataataataatctgagatgcactgtaaagcttcaggaaattgcaactggccactgcaccttccataagagagctcaaatatTTGCTAAAGCATTGGTTGCCTCACAGGCACCCCTTCCCTTGTTTGCCTGTCTGGAGCATGGTGTTGGCCACACGGGCAAAGGGGGGATGTATGCATCAgtcttttaaattggtttgccCCAGGTTTTAAAGTAACAGTTCAGCTATAATATAGAACTTGCCACATCTGTCATGCTCATAATCCTGGGAAGGGAGCTAAATTCATAAAATCATGCCTTTTGttaatatgcaaatagattgtgtttaaatgcctaaaatgttgtggttatgaatatatacttgtaataatgCATAGGTTTTCTAAATGGGTTGAAGCCTATCCCTGTAGGAAGGCTGAAGTAGTAGCATTAGCAAAAATACTGTTAACAGATGTCATATGTAGATTTGGCATTCCAGGGAAATTTCCAGTGACAGGGGCACTCACTTCACTGGGACAATAGTACAGGAACTATGCAAAGCCCTGCAAGTTAAGCAGCATTTTCACTGCCCCATCACTCTCAGTCAGCTGGAGCAATGGAGAGACAAAATGGAATATTAAAGAATAAGCTGGCTAAAATATGTGAACAAACAGGACTCGAATGTCCAGATGCCCTTCCTGTAGCCCTAATGATAATGAGATCGTCAGCAAATTGGAAAACTGGTCTTTCTACGCGTGAGATTATTATGGGATGACTTATGAGACTTCCCATCACTCCTCAATTGTCTGTAAGGGAAATGGACATCCACTTGATGGATGATgctatgttgtatttttttgtatgggACTAACACGTGCATTCGaagctgtccattcacaggTAAAAGCAGTCCAGACTGAACCAGCCCAGCAGGATTGTCACCCCTTCCAGCCAGGTGACTACGTGTACATCAAAGtacacaaaagaaaatcctcCCTACAGCCCAGGTGGACAGCGCCCTATCAAGTGCTACTGACCACCCACACCGGTGTGAAGTGCCAAGGAAAGACGACATGGATCCACTCCTCCCACTGCAAACTTGCCCATCAAAGTGATCAGCACAACTCTGGTGGAGACCAGAGGGATGCTCCACCTTTGCCTGGATCCTCTTCCTCATCGCCTGCGGGACCATCATCTGCGCCATAGTAACCTGGGAAGAGGGCGCCTTCAACTCCAAGCTGACAGGATCATCGCTGACTGGGGAAGCCAGTCCAGAAGAAGCTGACATCGTTGTCACCCTCCAGCTATCAGCACAGGGCCAGAACAGTGGCCCAAAAGGAGCAACAGGATGCACGGGTCCACAAATACTGGGTGACGTGCTAGTAACCTCTCCCCTTTCGCATATTGACATCACAGACACTAACATGTACACTGATAAAATACGACTGAGGATTCGACAGCGACAAGACAGCCACCTGACCAGAGGAAACGCCTACCTCCAACTGTCTTATCAGTTTAcaaaagacttgaatcaaaATGCTGGGTGTGTTCACATGTGCCCCATAATGCTGAGGGAGGCATTCCCATTATTCGGGTTCCCTTGACTGCGGAAGATAACTGTGCTATATTGACTACATCACCCCCGCCATGAGATCTCTTTCAAAACCCCTAAGGGCCATAACGTAATCAAAGAGATATCTCTGAAACTGAGCGTTTCTTTTCCATATTGATCTCCCCATATGGTGTTGGGTGCTCTATACAGGAGGTTAAGATACTGGCCTCAATCGTAGAGGAGATTAGTAATAAAACTGCAGAATCTATAGATGACAtaatgtagcgtaaggtacacttataaatttcaattaaagaagtgaatttatagtatcacctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37452 False 2402 lncRNA 0.42 3 49795971 49905089
TU37454 True 2442 TUCP 0.42 2 49795971 49900951

Neighbor

gene id symbol gene type direction distance location
AMCG00008276 slc13a3,LOC106572485 coding downstream 20003 49773114 ~ 49775968 (-)
AMCG00008277 NA coding downstream 43343 49739055 ~ 49752628 (-)
AMCG00008275 NA coding downstream 84362 49709866 ~ 49711609 (-)
AMCG00008274 NA coding downstream 134221 49653570 ~ 49661750 (-)
AMCG00008268 gdap1l1,LOC102776784 coding downstream 316894 49478333 ~ 49479077 (-)
AMCG00008282 NA coding upstream 41922 49947011 ~ 49987575 (-)
AMCG00008284 LOC105895941,LOC108424612,LOC108255211,LOC103042686,LOC104930306,LOC103375199,LOC101473264 coding upstream 91871 49996960 ~ 50029620 (-)
AMCG00008285 tcf15,LOC106567197,LOC107669611,LOC107594541 coding upstream 182004 50087093 ~ 50089767 (-)
AMCG00008286 NA coding upstream 210944 50116033 ~ 50119306 (-)
AMCG00008287 scrt2,LOC103139108,LOC102228875 coding upstream 242728 50147817 ~ 50155865 (-)
G29926 NA non-coding downstream 8079 49786331 ~ 49787892 (-)
G29904 NA non-coding downstream 174011 49592278 ~ 49621960 (-)
G29908 NA non-coding downstream 181551 49610123 ~ 49614420 (-)
G29899 NA non-coding downstream 207166 49515484 ~ 49588805 (-)
G29834 NA non-coding downstream 378757 49411356 ~ 49417214 (-)
G29957 NA non-coding upstream 69337 49974426 ~ 49974646 (-)
G29987 NA non-coding upstream 220551 50125640 ~ 50126131 (-)
G30003 NA non-coding upstream 279943 50185032 ~ 50185277 (-)
G30049 NA non-coding upstream 346621 50251710 ~ 50251922 (-)
G30051 NA non-coding upstream 355667 50260756 ~ 50261187 (-)
AMCG00008273 gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014 other downstream 258690 49497400 ~ 49537281 (-)
AMCG00008264 NA other downstream 542727 49175725 ~ 49253244 (-)
AMCG00008255 NA other downstream 1377038 48411085 ~ 48418933 (-)
AMCG00008256 arfgef2 other downstream 1504528 48202621 ~ 48291443 (-)
G29544 LOC100846954 other downstream 1671289 48123925 ~ 48124682 (-)
G29974 LOC101154678 other upstream 148736 50053825 ~ 50054102 (-)
G30054 NA other upstream 368649 50273738 ~ 50274183 (-)
AMCG00008298 NA other upstream 618898 50523987 ~ 50528036 (-)
AMCG00008318 NA other upstream 2424147 52329236 ~ 52339097 (-)
AMCG00008325 znf341,LOC106566899 other upstream 2475967 52381056 ~ 52384567 (-)

Expression


Co-expression Network