G30010 (ub2v1,LOC105022328,LOC107557526,LOC106572481,LOC108425074)


Basic Information

Item Value
gene id G30010
gene name ub2v1,LOC105022328,LOC107557526,LOC106572481,LOC108425074
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50308100 ~ 50311209 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU37546
ttttttgtttgtttgtttgttttgcctttttatttcaaGGAAgtgatttttctctttaaaaaaaaaaattaaaatgtagaacattaaaaaacaaaaacagggagTGAACTGTCAACTTCCTAAAACAAGGCCCTGATCCTTAGCTTTACTAACAATAAGTCAGTGCAAACCCAAGAGCtgtgtcattttaatgaaaGGGGCCATAATAAAGATCACATACAGAACTGTCCAATTGTTTCACAGAACAATGCGGTCTGCATTTATTCCTACTGTACCTGGCAGTAAAGTAGAACAATTGCCTTTAAAAtgggaaaagaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacgcagcACACACAACATTTACACCCAGTAACAagattatttatgttattgtacAACCTGCatttataacaaataacaataataataattaaaaaaaaaaaaaaaaaaaaaaaaaagattagtaagatgtacagtattttaatggTCTGGTCTGCACTACAGAGTCGGTCTCTGCAAGTCTTGTCTTATGTCCAGCGAGAGGGTCAGAGGGAGGACAGGAGGATGGTGGGTGAAGGAGGGGAGTGGGAGAAGGGGAGGGTATCTTCCAGAGTCTCAGAGAAGAATGGGGAAAGTCGCTGGCTGCCAGGTGGAGTGAatggagggaaggagggggtggggggggggaaagatgAGACGAAAAAACGAGAAAACCAAAAACTGTAGCTGGTGATCAGTTGCTGTAGATCTGGCCCTCTGGTGGCTGTGGGAGCTTCATGTTCTCCTTGCACATCATGAGCCTCCTTAGCTCCTGCAACACCACTCTGATGCTGTAGGAATTCTGCCACTTTGCCAGAGCCGAAACTGCCCGGGTATCCACCTGGAGGGGAaggtgagggagaggggaaaaggAGCAGGGCCACCGCATAGTGAGAAGAACAATGCAAATCCAGCTACCAGGCAAGCcacacagacagtcacagaCTTAATGTGCTTGACTGAACGGTTTCTATTTAGGGgtacatgtgttttttgtgaCTGTTGGATAACACAGGATCTACAGAAAGGTTGCTTTTCTTTCGGGGGGGAAATGGAATTTGGTGACCTCTGAAGCTGTGTGGTAGCTCTTGTCAAGTAGGGTGATGATAAGCGCTATTATATTCCAGATATGTTTTTTGAATCTTACAAAAAGGGGGGCACAGAAAAATGAATGGTCAAATACAGACTGAATACAATAGATAAAAACCCACCACTCAAATCCACACAAATTTTGATTCCTAGTTGCTTCTGCATTATCTATTATGTTCTTGGTCCTATCTGTGttgcagaaataaatactttttaatatttattttcacagttttacaaatatgcaaatgagcTTTGTACTAGACACCTCAAGGGACCTACTAGTCAGAGGCTTTGCAGCAGGTACAGATTGAACGAACAGCATTATCTGTAAATGTTGTCTATTGCAAACAACATGTAGTTTGCCTCTGGAATTTCATGTTACACCTCCATACTGGTTATGGTTGAacttaattacagtaaaataattgcCATTGCTCTTCTACATCTGGATAATTACTCCTCTTGccgtgaatacaaaataaataaaaaggaaaccaactgtaaaaatatgcaaacataTGTGCCTCTCTCTTGTGCAGAAGAGAGATTATCATGAGAGTGTCAGGTTCTGGTTCACCTTCAGTGCAGAGTGGAACCACTCTTGCCTACCTGTGCTTCACAGTGGACATTGATGTAAAAGATAattaatacgttttttttttttatgtattgtttttgaggAAGAAGAGGGTGGAAGTTAAGATATTAAAATGGGGGAAGTTAGAACGAAAACGAAATTCATAAATCAGTGCAATATCCAGTGGCAGGGATGATTTTTTCAGCTCAAtatgctaatatatatatatatatatatatatatatatatatatatatatattattttctccttcatGTGACAGGAATGTTCTCCGCCCACTGAAGCTACTCACCACACCGTTGGAGTTGTGCACGCCATTCAAGTTGATCTTGGTCACAAATCTGACAAAGGGAGGTGTCTCTGGGTATCTGGGCCCACATTCCACTTTCAGGCTGTACATCCTGTTCTCGTAGATTGTCCTTGGCGGTCCGATGATCATCCCTCTCCAGCGAGTGAGGGTCATGTCCTCATCATCCTCCAAACCCCAGCTCACCGTCCCATCTCCCACGCCCTTCTGCCCCTCCTCTAGCTCCTCCAGCAGCCGGAAGTTACGAGGTACCTTCACGCCTGTGGACAGCAAAGACAAAACGATCCTGTGATGTAGTGAGGCCCACTGTGCAAAGGAAACTGTTATGGT

Function

NR:

description
PREDICTED: transmembrane protein 189 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37546 True 2380 lncRNA 0.41 2 50308100 50311209

Neighbor

gene id symbol gene type direction distance location
AMCG00008283 NA coding upstream 426748 49879979 ~ 49881352 (+)
AMCG00008281 NA coding upstream 711307 49587067 ~ 49596793 (+)
AMCG00008280 jph2,LOC107707015,LOC108275945 coding upstream 748020 49549906 ~ 49560080 (+)
AMCG00008272 NA coding upstream 836485 49469289 ~ 49471615 (+)
AMCG00008262 stk35,LOC105016730,LOC106583621,LOC103372836,LOC104935842 coding upstream 1368005 48923864 ~ 48940095 (+)
AMCG00008291 NA coding downstream 47778 50358987 ~ 50359865 (+)
AMCG00008292 NA coding downstream 55235 50366444 ~ 50403958 (+)
AMCG00008294 NA coding downstream 140101 50451310 ~ 50460054 (+)
AMCG00008296 NA coding downstream 251545 50562754 ~ 50582183 (+)
AMCG00008304 NA coding downstream 1022094 51333303 ~ 51336685 (+)
G30017 NA non-coding upstream 33917 50273735 ~ 50274183 (+)
G30016 NA non-coding upstream 40650 50267223 ~ 50267450 (+)
G29991 NA non-coding upstream 151838 50155704 ~ 50156262 (+)
G29990 scrt2,LOC106572483,LOC103139108 non-coding upstream 159377 50147649 ~ 50148723 (+)
G29986 NA non-coding upstream 181969 50125690 ~ 50126131 (+)
G30012 NA non-coding downstream 134648 50445857 ~ 50448965 (+)
G30073 NA non-coding downstream 217324 50528533 ~ 50530747 (+)
G30078 NA non-coding downstream 224565 50535774 ~ 50535987 (+)
G30083 NA non-coding downstream 244175 50555384 ~ 50555589 (+)
G30099 NA non-coding downstream 439171 50750380 ~ 50752307 (+)
AMCG00008279 NA other upstream 449524 49839512 ~ 49858576 (+)
AMCG00008271 NA other upstream 889354 49404856 ~ 49418746 (+)
AMCG00008270 ttpal other upstream 1012741 49288246 ~ 49295359 (+)
AMCG00008263 NA other upstream 1137083 49163816 ~ 49171017 (+)
AMCG00008249 NA other upstream 2366346 47929667 ~ 47941754 (+)
AMCG00008288 ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 other downstream 11504 50322713 ~ 50356404 (+)
G30166 NA other downstream 1115372 51426581 ~ 51428055 (+)
G30232 NA other downstream 1789553 52100762 ~ 52101524 (+)
G30299 NA other downstream 2067120 52378329 ~ 52378776 (+)
G30300 NA other downstream 2070132 52381341 ~ 52382418 (+)

Expression


Co-expression Network