G30012


Basic Information

Item Value
gene id G30012
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50445857 ~ 50448965 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU37548
AGGGCTGATTCGGGCATCAGAGGATTTTACTAcctaaaatattttgtgaaaatacatCCATGTTCACTGAACACAGCTACTCTTGTGGACAAGACTTGAGTATTTTACATGCAGGGttaacagcaaaaaacaaaaaatagtagctaaaagtacaaaaataaaataaatctatcacTTTTTCAAGGCTGTCATAGTTCACCCATGTGCGAGTTTAATCTGAGATCGCACCTACTTTTGCTCTGGTGATTGGAAAGACTGGTTACGGTTCACACAAACTGTAGTGTGAGTTCACAGGCCTCAATTGTACAAAGTCTACTTTAAACTTGCctaatatgaatacatacaaaaggctgaataacaaaaacagaccaTCAACAAATATCTAAAAAGTATCAAGCTGTGGCAGTGCTATACTGGACCATCTTGTTCCAGGTGCTGTAAAACCAAATGGACTGACATACACCTTTTACAGTATTATAACTCTGATTAGAAGCAGAAAACACACATAGTTCTTGAATAATTGACCACCTTTTATAAACCATGACCAACGTGTCAATACAGTCTTCACATGTAttgttatgttatgtattttctcCCCATAAACCCTGATCACCAGTCTGGGGGCTCCTTACAAACCTAGCATGAAGAAAGACCAAGACTTCACACAGCTCAGATTTAAGAAAAAGACTGCATGGCATACAAGCATATTATCCGGCTTACAGCAACACAAATCTTGCAACTGATCAATTTTTATTGCATATTAAAAGTATTGTGACTGAGCAGGATCTAGAGGAGTAATGTGTCTGAGAGTAAAGTgtcagacatatatatatatatatatatatatatatatatatatttattgtttaacagCTGGTCAGAATGGCCTTTGATGATTCGACACAGGGAAGAACAATCTAACTAGCATAATACCACAATCAAGCCTTTAACACAGATGCACTACATACTGTTAATTCTGTAGGTCTCCTCAGAACTCTGTTATGATTATTACCATCATAATGTGAAAACAGTGCATAAAGTGGGCATAAATTGGAAAAAGGATACTTTAAAACATCCTGATCCTTATGATGGAAATTAGAGGTTTCTGTGttgattaaaaactaaaactaaattaaaatcaatgaaaaaatatgcaactTATTAATGAAAAGTGTAGACTatgacaaatgtgtatttaacagTATAGAAAAAATTGCCTAGGGTGATCCGGTAAAGGACAGCATAAGTAACTGCAATATTCAACAGTACTGGCTGACAGAAAACTCAATTTGTGTAGTTACTGGGCCTAAAGCAAGAACAATTAGTTTCAGTAGAATGATTGTTTCCAAGACAGTTGTTggaatattaaaaagtaaacgtttattttcagtttgtagATGAGTAATATGTCTGAGGAAGGAGTGTCGGAAAGAAACACTTCTGGTAAATTTATTAACTGCATGATTGCTCTCCGAATTTTGTTAGGCTTTCCTACTTATGTACTACCTAACACATAATGGTCaacaatactttattttgagcctttatttcaagatataaaacaaaatccagaaaacgaaggaacatttaaaagacctgaaaggaaaataagttGCAGTTTGTTCTCAGTTACTATGGgcatcaaaaaatatataaaagaaggGATTCCTATATTTTTTGTTCACTATACAAAGGTCAATTCTGTGGATTTATATAGGGAAGAAACCAGCTTGGATTTgatcataatacaaatataactaaAACCAGATGTTTTTCAGGATATTCAGCAGTAACCCATACTGATGTAAACAAGAAACTTGAAAACGTATGGGAACATGACCCAAGTTCcatccttttatttgtttagggaaaagaatgacaaatttgcaaagaaaaaaatcgGAAAATAACAGCAAACATCCTTTTGGAGAATTCCtaaggattttatttaatttaatttgatgagGCTTATCATTGCAGGCTTGTCCTCAAATAGTCTGTGGGCAAATGTATTGAGGCAATGCAATTGCATTTGGAAGGATTCATGTCCTTTGACAAGGAAAATGTGTGGAAGGAGTCAAAGAGTAAAAGATCAATtctgcttcagaaaaaaaaaagaataaagactTGATTTACAGTCAAAAAACCttccagctccttcagggtGCCATATTTATTTGTGCAATTATTCTCAATCTGGTTTTAAAGCACATATGAAGGTAGTGTACTTTGGGCAACAATAATTGGTTAGCTTGCACCTTGGCCTTCCCTAGTTGTCCTGCCCTGGTCTACAGTCCACTCGTGACacttctaaaaatacaaaatccagCTGCCTACTGCCCATTGGCCATATTCTGCCAAGAGATTTTCTTGTGCGGTAAACTCTATTGCCGTGTTTAGTACCTATAGTATTCATCTTACATTTGAAGTAAATGATGTCAGGTCAAAGGACTTCAGGACTTCATTCTAAATGTATTAGAATTAGtatttgaaaattattataGTACTCAGCACTTGTTGGattattgctatatattttagGAAGGAGGGGGTTAATTAGTCCAGTTACTTAGTTTGTGtgatatcattttaatttcataacgAGAGAGAATAGAAGGGTCCAACCAGACACTTCCGCTAAACTGGATGGTAGTTTAAGGATGTAGGAATTGCAAGTCTCTGTTAAGTGACTAATTGCATCGCCATTTTTACTGCAAACTTAAGATGATTACTAGTATTGCCCTGTAGGCCTATACCAGAAATGCTCAGATTTTCAAGGGATTAAAGGGCACAGTACAGATTGTCCTCCACACAATTATCCTTTTTCCTCATTAGTAACAAAGGGAAAAACTTACGCTATTACCTGCAGTGATACTAATAGATTGGCTTTCGGAAAATGTTTAACTGTATCGTCATGCTAAAACCAGAGCACTTTATAAAGAAGAAGGGGGATAGCTTGTTTTGGcaggttgtgtgtttgttgggcATCCGCGGCACAACAGACATGGTTCAATAGTGAATTATGTGTAACAGCTCCCCCCTGcaacacaatgtaaaaatgaagGATGGCTTTATGTAGTACAATGTTCAAGGCAACATTTTTATACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37548 True 3109 lncRNA 0.35 1 50445857 50448965

Neighbor

gene id symbol gene type direction distance location
AMCG00008292 NA coding upstream 41899 50366444 ~ 50403958 (+)
AMCG00008291 NA coding upstream 85992 50358987 ~ 50359865 (+)
AMCG00008283 NA coding upstream 564505 49879979 ~ 49881352 (+)
AMCG00008281 NA coding upstream 849064 49587067 ~ 49596793 (+)
AMCG00008280 jph2,LOC107707015,LOC108275945 coding upstream 885777 49549906 ~ 49560080 (+)
AMCG00008294 NA coding downstream 2345 50451310 ~ 50460054 (+)
AMCG00008296 NA coding downstream 113789 50562754 ~ 50582183 (+)
AMCG00008304 NA coding downstream 884338 51333303 ~ 51336685 (+)
AMCG00008309 NA coding downstream 1086505 51535470 ~ 51542896 (+)
AMCG00008308 pfdn4,pfd4,LOC107697845,LOC107758785 coding downstream 1103641 51552606 ~ 51560087 (+)
G30010 ub2v1,LOC105022328,LOC107557526,LOC106572481,LOC108425074 non-coding upstream 134648 50308100 ~ 50311209 (+)
G30017 NA non-coding upstream 171674 50273735 ~ 50274183 (+)
G30016 NA non-coding upstream 178407 50267223 ~ 50267450 (+)
G29991 NA non-coding upstream 289595 50155704 ~ 50156262 (+)
G29990 scrt2,LOC106572483,LOC103139108 non-coding upstream 297134 50147649 ~ 50148723 (+)
G30073 NA non-coding downstream 79568 50528533 ~ 50530747 (+)
G30078 NA non-coding downstream 86809 50535774 ~ 50535987 (+)
G30083 NA non-coding downstream 106419 50555384 ~ 50555589 (+)
G30099 NA non-coding downstream 301415 50750380 ~ 50752307 (+)
G30102 NA non-coding downstream 343110 50792075 ~ 50792290 (+)
AMCG00008288 ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 other upstream 89453 50322713 ~ 50356404 (+)
AMCG00008279 NA other upstream 587281 49839512 ~ 49858576 (+)
AMCG00008271 NA other upstream 1027111 49404856 ~ 49418746 (+)
AMCG00008270 ttpal other upstream 1150498 49288246 ~ 49295359 (+)
AMCG00008263 NA other upstream 1274840 49163816 ~ 49171017 (+)
G30166 NA other downstream 977616 51426581 ~ 51428055 (+)
G30232 NA other downstream 1651797 52100762 ~ 52101524 (+)
G30299 NA other downstream 1929364 52378329 ~ 52378776 (+)
G30300 NA other downstream 1932376 52381341 ~ 52382418 (+)
AMCG00008334 prex1 other downstream 2542320 52991285 ~ 53087480 (+)

Expression


Co-expression Network