G30065


Basic Information

Item Value
gene id G30065
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50386260 ~ 50386559 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU37606
gcaggtgctgttacacgtggtctgccactgcgaggacaatcagctgtccttcctgtctccctgtagcgctgtcttaggtgtctcacagtacggacattgcaatttattgccctggccaaatctgcagtcctcatgcctccttgcagcatgccaaAGGCatgttcacgcagatgagcagggaccctgggcatctttcttttggtgtttttcagagtcattagaaaggtctctttagtgtcctaagtttttataattgtgaccttaattgcctaccgtctgtaagctgttagtgtcttaacg

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37606 True 300 lncRNA 0.48 1 50386260 50386559

Neighbor

gene id symbol gene type direction distance location
AMCG00008289 LOC105022328,LOC106572481,LOC107572061,LOC107683645,LOC108425074,LOC103044311 coding downstream 72825 50308778 ~ 50313435 (-)
AMCG00008290 slc52a3 coding downstream 92897 50292332 ~ 50293363 (-)
AMCG00008287 scrt2,LOC103139108,LOC102228875 coding downstream 230395 50147817 ~ 50155865 (-)
AMCG00008286 NA coding downstream 266954 50116033 ~ 50119306 (-)
AMCG00008285 tcf15,LOC106567197,LOC107669611,LOC107594541 coding downstream 296493 50087093 ~ 50089767 (-)
AMCG00008293 ptpn1,LOC107669644,LOC107751444,LOC107556311,LOC106522952 coding upstream 11180 50397739 ~ 50406216 (-)
AMCG00008295 LOC107738191,LOC107754892,LOC107590469,LOC107558752,LOC106567112 coding upstream 64528 50451087 ~ 50518539 (-)
AMCG00008297 kcng1,LOC102780788,LOC107711602,LOC107558732 coding upstream 163506 50550065 ~ 50559321 (-)
AMCG00008300 nfatc2 coding upstream 405517 50792076 ~ 50798319 (-)
AMCG00008299 NA coding upstream 423820 50810379 ~ 50813806 (-)
G30061 NA non-coding downstream 29912 50353895 ~ 50356348 (-)
G30059 NA non-coding downstream 51655 50328270 ~ 50334605 (-)
G30058 NA non-coding downstream 71835 50314172 ~ 50314425 (-)
G30053 NA non-coding downstream 118825 50267076 ~ 50267435 (-)
G30051 NA non-coding downstream 125073 50260756 ~ 50261187 (-)
G30070 NA non-coding upstream 59160 50445719 ~ 50448970 (-)
G30086 NA non-coding upstream 214898 50601457 ~ 50602050 (-)
G30091 NA non-coding upstream 227029 50613588 ~ 50613903 (-)
G30094 NA non-coding upstream 267660 50654219 ~ 50654513 (-)
G30096 NA non-coding upstream 273385 50659944 ~ 50660176 (-)
G30054 NA other downstream 112077 50273738 ~ 50274183 (-)
G29974 LOC101154678 other downstream 332158 50053825 ~ 50054102 (-)
G29928 NA other downstream 481171 49795971 ~ 49905089 (-)
AMCG00008273 gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014 other downstream 848979 49497400 ~ 49537281 (-)
AMCG00008264 NA other downstream 1133016 49175725 ~ 49253244 (-)
AMCG00008298 NA other upstream 137428 50523987 ~ 50528036 (-)
AMCG00008318 NA other upstream 1942677 52329236 ~ 52339097 (-)
AMCG00008325 znf341,LOC106566899 other upstream 1994497 52381056 ~ 52384567 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000066_00419486_00436877 NA coding CI01000066 null 418918 ~ 437551 (+)