G30108


Basic Information

Item Value
gene id G30108
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50750421 ~ 50753174 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU37660
aaatatatatacacatacacatatatttaaaggcTAAAATTATATCTTAACTATGCCCCACTTGTTAAATGCAAAACTTCCAGTACTTGATGGCAGGTTTCCATTAAGAAGTAGACAGTAGCCTCttgcaaaataaagtattaGATTTGTAATTAGCAATTGCTTGATGGAAATTCAATATTATTGCACAGTACTCCCTAAAGATACCGttttatatctttaaataaattaacagcagtcttttttcttaatttttaattttaatttttcttacattcttcttaaaatgtaaaacccagCCATTTTTGTATCTGTAGCCTCAGTAATGTCTTAGGTATATTCTCCTTTTTATATTCTAAAGTttgaataaacaaagaaaatgactCTATTTAAACagactttttatatatatgtgttttcgGTTTGTTTTACTAATTATATGACATACCCAAActattgcacattttgttttagtgttaaaactgaaacatctgagtaattatttattgatcagCTCTCAAGCTGAAGAATGTACCAGGAGATAATatctttgctttccttttctaTTCCTCTTCGTGTCGTTGTatgctgcatttttaaattgtacattaaatGTCAAACTCCTAGTGCCTTCAGATTAAGTTAATTAGTAGATAGGCCTATTGAGATTACATAGTTCCTTCCTATATAAATACTTGTGTGAGAAAGGAGACTACCAAAGATTGTAatctttttataaatatttattttacagatgttcattatttttcttgaaaCCTGAATTACTTTTTATAGAAGTCTAATTACTAGGCAGGTTTTAACTGATGTTGTGTATGCCCACAATGCATTCTATTCTGCTGCCAGCTTGAGACACAAACCTTGTCAATCTAATTGTAAACTAGTTCCTGGTGTGTGAAAATGGAGGccaaatatcaatattttaatctGTGAAATTGATTCTCATGTTGCTTTGCCGGCCCTTTCCATGTAAGGGGACAGTGGTGCACATGGACAGTGATAACAATTTTTGTGTTGCGTTGGACAAAAGTAGTTCCAACAAAACTGCGCTGTGATTTACCACcagcatgttttaatttcaaactgagaatCTAAATTAATTCACTTTGTGATTGTACTCACTTGGATTAAAAATGCCTGAACGGTCAATTTGGTGGTCCTCACTATTCGCCTGCTGTATTGGGTGTCTTTGTGGACATTGTTTAGACCATTGTGCGTGGTAGAATTAGCTCATCCGTTGTGTTCATCCCAAAGTTGTATGCCCTGGCCTTGTATCATGTGGATGGTGGCCTTACTTGCACTTGAGGAAACTGTGTTTTTCCTCACATATCTAAATATTTTTCTCTGGTGCTTTCCTGCCATTGTAATGAAGTCTTTATACCCGTTGCCTGCCAAAGCTATAGCTTGTATTTTCCATTCACTTCCAAAGCCTTAGACCCATAATAGCTTCAAGTTTAATATGATGAAAAAGGCTTCCTTGTTCtcaagcaataataataataatagcagactttatcaggaaaaataaaagtatgtacaataattcaatttacaaaaaaaaaaaaaagaaatcccccCCCAATATAGCTTTAATTGCCACATTTATAGTTGTTCACCTCACACTTAGTCTCCCCTCcaaatcattttagtttttagctTGCCTTCAGGATTACACAACTCAAATTAGACTGGTGTTGAATGTGGTGTTGTCTTGGGCATTCTCCTTACATATCTAAACACTGCCGATGTAGACTTTGcaagcaaaaacatttattgcTAAAGCATTCAATGAAAAAACTATAGGCTCTATAGAGAAAAAAATTAGGCTGTTGAGTTACAGGGCTGTCAAATGTCAAATTCTTGTCTTTAatatagtaataaaataatatatgtaattatcaTCTTGTTGGgatattctgttttaaatggtaTTTCTTGTCTTTATGTAAGTGTTATATGTGACTTGCTTTCTCAAAACCAggctttggctttttttttattttaatttggattgcAAATTGCTTCAAGCAGATGAGGccttagatattttttttcactatAGGTTTGGgagtaatataaataaattaacattaaaaataaatctggatgTGCCTAGTTTGAAACAAGCAGTTCACAAATATCTGTATGGGGCACTTTTAATGCCAATGGATTGACGTCCAAATCCTAATCCATAAAAATACAGTTGTGCTGCAGCTTATAAAATTTCTTTCCATCTTTTTAATGTACAGCATTTACATCCGTATTCTAAGCAATACATACTCTGAATGTAGACTTTATTCATAAACTGAATTTTATTCCTGTCTGTAAATTGACTGCTGCTTAACTTTGTATAAAAAGTTCTCAATTacccttttaatatttttattttatttttattaagtgtGTAGTTAAAATATTTCTTATGAACTGCATCAGTTGTTGTCAGCCCTTTTTTTGTTAATCAAGGCcttattaatattttgaaatatatatatatatgccaaaGCTATTTTATTCTACTGTAATAATAACCAGAGTTGTGTGTCACTCAGATGTAAGAGATCCCAGCCttgtttgaaatgaaagaacaagGATTATTAACAAGCACCTAGGAAGGTTAATCTAATAAACCACATTTTCttgaatgcatttatattgCTATGCAAACCAGTTACTGCAGTTTTTTCTAATGTATTTCTATCCTAAGACAATATGATGttgccattcttttttttt

Function

GO:

id name namespace
GO:0042578 phosphoric ester hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37660 True 2754 lncRNA 0.32 1 50750421 50753174

Neighbor

gene id symbol gene type direction distance location
AMCG00008297 kcng1,LOC102780788,LOC107711602,LOC107558732 coding downstream 191100 50550065 ~ 50559321 (-)
AMCG00008295 LOC107738191,LOC107754892,LOC107590469,LOC107558752,LOC106567112 coding downstream 231882 50451087 ~ 50518539 (-)
AMCG00008293 ptpn1,LOC107669644,LOC107751444,LOC107556311,LOC106522952 coding downstream 344205 50397739 ~ 50406216 (-)
AMCG00008289 LOC105022328,LOC106572481,LOC107572061,LOC107683645,LOC108425074,LOC103044311 coding downstream 436986 50308778 ~ 50313435 (-)
AMCG00008290 slc52a3 coding downstream 457058 50292332 ~ 50293363 (-)
AMCG00008300 nfatc2 coding upstream 38902 50792076 ~ 50798319 (-)
AMCG00008299 NA coding upstream 57205 50810379 ~ 50813806 (-)
AMCG00008302 atp9a,LOC106567116 coding upstream 87086 50840260 ~ 50916380 (-)
AMCG00008301 NA coding upstream 170878 50924052 ~ 50936800 (-)
AMCG00008303 zfp64,LOC106572631,LOC104953815 coding upstream 274094 51027268 ~ 51036822 (-)
G30096 NA non-coding downstream 90245 50659944 ~ 50660176 (-)
G30094 NA non-coding downstream 95908 50654219 ~ 50654513 (-)
G30091 NA non-coding downstream 136518 50613588 ~ 50613903 (-)
G30086 NA non-coding downstream 148371 50601457 ~ 50602050 (-)
G30070 NA non-coding downstream 301451 50445719 ~ 50448970 (-)
G30143 NA non-coding upstream 314966 51068140 ~ 51068561 (-)
G30149 NA non-coding upstream 429500 51182674 ~ 51182933 (-)
G30170 NA non-coding upstream 667473 51420647 ~ 51421417 (-)
G30172 NA non-coding upstream 672157 51425331 ~ 51425584 (-)
G30218 NA non-coding upstream 1000909 51754083 ~ 51754304 (-)
AMCG00008298 NA other downstream 222385 50523987 ~ 50528036 (-)
G30054 NA other downstream 476238 50273738 ~ 50274183 (-)
G29974 LOC101154678 other downstream 696319 50053825 ~ 50054102 (-)
G29928 NA other downstream 845332 49795971 ~ 49905089 (-)
AMCG00008273 gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014 other downstream 1213140 49497400 ~ 49537281 (-)
AMCG00008318 NA other upstream 1576062 52329236 ~ 52339097 (-)
AMCG00008325 znf341,LOC106566899 other upstream 1627882 52381056 ~ 52384567 (-)

Expression


Co-expression Network