XLOC_006024


Basic Information

Item Value
gene id XLOC_006024
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 28264236 ~ 28282323 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013614
tgaaccgcctgtcAGAAGATTCTAAACCTGACCAGCACTCGGCCCGACCAGAGGCATCATAATCTGTCATCACACACCGCCTTCAACAGCAAGGCTCGGAAGAGAAAACAGAGTGAAATGCATATGAGACATTTATCTGAGACTCACGGACAGACATCACTTTCAGGGGTCAGAGGGCATCTCTAATTGGCTGGAGAAAAGAAAACAAGCTCTCTTTCAGGGTGGCAGATCTAAAGAGGGAAATCACAACAACTCAAAACAGAGGGGACTAAAACTTTGATTACTGTTTCCATCATAGAGCACTCTGTGAAAATAATATATGAGGCTGGCGGCATCTGTTACATTTGTTACATGTTCCTTCATGACTGCTACTTGTATACGTGCTTGTGGCATAAGAAATGATTGTATGCAGACAAAGGGGAAC
>TCONS_00013402
ggagttggaactaaaatatacaggacactggctctccaggaccaagtttggacacccttgatgTAGACTTATTtacaaaggaaaaaaatacacaaaatacaaaaacaaaaagtaatactataaaataaatattttaaaaacaaaatactaaaactttaaaattaaggttttaaaagctaagttaatttaaatgaataacaaaagtgaaatacatatttcaaatatttgaataacacctttattaaaaaaatattttcatttgacaaAATATCGacattcatttttaagtgaataatccctttaaacaaacaaaaaagtaatcgTAAAGAAAAGAtgagaaagaaaagaaacaaatgaGCATGGGAGGGCAAAAAGCATATGGGAAAACAATAGATATTAATCCAGCAATTTTACAATAAGCAGGGAGGGTGAGCCATTAATCAAAATTACACATTATATGTGAgctaatttttctttttcattatgttCATTATATTCCAAACACTGCAGCATCTACTCTGAATGTGTAAACAGattttcatacatttattcatgaTCACATTGCGGATAAGGCGgcaatattttttcattaaattcctGACTACaatatctacatatatatatatatatatatatatgtgtgtgtgtgtatagaaatgCTGAAATATCAGGTAGTTACCAAAACAATGCCATTAATTTCCTTCATTATCAACAGACCAGCACTCGGCCCGACCAGAGGCATCATAATCTGTCATCACACACCGCCTTCAACAGCAAGGCTCGGAAGAGAAAACAGAGTGAAATGCATATGAGACATTTATCTGAGACTCACGGACAGACATCACTTTCAGGGGTCAGAGGGCATCTCTAATTGGCTGGAGAAAAGAAAACAAGCTCTCTTTCAGGGTGGCAGATCTAAAGAGGGAAATCACAACAACTCAAAACAGAGGGGACTAAAACTTTGATTACTGTTTCCATCATAGAGCACTCTGTGAAAATAATATATGAGGCTGGCGGCATCTGTTACATTTGTTACATGTTCCTTCATGACTGCTACTTGTATACGTGCTTGTGGCATAAGAAATGATTGTATGCAGACAAAGGGGAACAAAGGGGTTTTTAAACCATCAAGCCCATAAAAGTGTAATACAACTTTAATAATTTCCCCCAAAcattgaatgtttttatttatttatttatttatttatttaatctctttatttatttaatctctatatttaattatttaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013614 False 424 lncRNA 0.44 3 28264236 28282182
TCONS_00013402 True 1250 lncRNA 0.32 2 28278103 28282323

Neighbor

gene id symbol gene type direction distance location
XLOC_006023 b3gat2 coding upstream 254662 27951688 ~ 28009574 (+)
XLOC_006021 NA coding upstream 458356 27785094 ~ 27805880 (+)
XLOC_006022 dre-mir-30e-2 coding upstream 469027 27795130 ~ 27795209 (+)
XLOC_006020 asrgl1 coding upstream 481472 27768898 ~ 27782764 (+)
XLOC_006019 CR354610.2 coding upstream 872299 27363949 ~ 27391937 (+)
XLOC_006025 CR762431.1 coding downstream 124590 28406913 ~ 28414559 (+)
XLOC_006026 slc2a15a coding downstream 134974 28417297 ~ 28442086 (+)
XLOC_006027 NA coding downstream 193278 28475601 ~ 28483406 (+)
XLOC_006028 fgf8a coding downstream 213096 28495419 ~ 28501985 (+)
XLOC_006029 fbxw4 coding downstream 230207 28512530 ~ 28575459 (+)
XLOC_006014 BX323884.1 non-coding upstream 1031663 27216641 ~ 27232573 (+)
XLOC_006011 NA non-coding upstream 1454917 26802494 ~ 26809319 (+)
XLOC_006030 NA non-coding downstream 282856 28565179 ~ 28567486 (+)
XLOC_006037 CU640488.1 non-coding downstream 457912 28740235 ~ 28740369 (+)
XLOC_006039 NA non-coding downstream 525769 28808092 ~ 28817882 (+)

Expression


Co-expression Network