AMCG00008362 (clpp,LOC107590418,LOC107753176,LOC106606781,LOC107724426)


Basic Information

Item Value
gene id AMCG00008362
gene name clpp,LOC107590418,LOC107753176,LOC106606781,LOC107724426
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 55562 ~ 57874 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008362
ATGGCGCTGTTGGCTGTGCGTCACAATGACTCTCATCACATGACCGGTGAGTCTCCGCGGCGGCTGCACTTCCGACTTCAGCAGCTGGAGAGACAGCAGTTCCGGGTCGGCAGGGGTCACACGGAGGTTATCGCGCAGCCAGGTTACACGATGCTGATACGAagTGCGCTACAGGGAGGGCTGTCCTTGCTGAGGGGCACACGGCTGGTCCACCGCAGCGCCCCCTGGTCCAGCCCCTTGATCCCAATTGTGGTGGAGCAGACGgGCCGGGGGGAGCGCGCATACGACATTTACTCCAGGCTACTGAGAGAGAGGATCATCTGTGTGATGGGGCCAGTCAGTACCCTCACCTCGATCGACGACTCCGTGGCCAGCCTGGTGATCGCCCAGCTGCTTTTCCTGCAGTCTGAGAGCAACAACAAGCCCATCCACATGTACATCAACAGCCCGGGGGGTGTGGTGACTGCCGGCCTGGCCATTTACGACACCATGCAGTACATCCTGAACCCGGTCAGCACCTGGTGTGTCGGCCAGGCGGCCAGCATGGGCTCCCTGCTGCTGGCGGCCGGCACTGCGGGCATGAGGCACTCGCTGCCCAACTCCAGGATCATGGTGCACCAGCCCTCAGGGGGCGCAAGGGTGAGCGCTGCGGGgGCCAGGCCACCGACATTGCAATCCAGGCCGAGGAAATCCTGAAGCTGAAGAAACAGATCAACATCATCTACAGCAAACACACCGGCCAGCCTCTGGACACCATCGAGGGAGTGATGGAGAGGGACCGCTATATGAGCCCAATGGAGGCCCAGGACTTCGGGCTGATTGACAAGGTGCTGGTGCACCCCCCCCAGGCCGGGAGGGATGAGCCGGAGCTGCTGCACAAAGAGCCCCCCCCCAGCAGTGCACCTGGCTCCggcactgccccccccaccctgtcGGCCACCAGCACCCCCACGGCCTCCTCCACCAAGCCTGAACCCTGATCCCTGACCCCAccctgctctcctctctcctgtctgtccctccctctccctctctctctctgcagtgtagCACTTTGTTATTCCAAACACACAATAAAGTGAATTTGATACAA

Function

symbol description
clpp Predicted to enable ATP-dependent peptidase activity; ATPase binding activity; and serine-type endopeptidase activity. Predicted to be involved in protein quality control for misfolded or incompletely synthesized proteins. Predicted to act upstream of or within proteolysis. Predicted to be part of endopeptidase Clp complex. Human ortholog(s) of this gene implicated in Perrault syndrome. Orthologous to human CLPP (caseinolytic mitochondrial matrix peptidase proteolytic subunit).

NR:

description
PREDICTED: ATP-dependent Clp protease proteolytic subunit, mitochondrial

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008362 True 1093 mRNA 0.62 7 55562 57874

Neighbor

gene id symbol gene type direction distance location
AMCG00008361 NA coding upstream 11787 41639 ~ 43775 (+)
AMCG00008363 NA coding downstream 2415 60289 ~ 70750 (+)
AMCG00008368 NA coding downstream 39695 97569 ~ 111307 (+)
AMCG00008367 cacna1ab coding downstream 69182 127056 ~ 127729 (+)
AMCG00008371 NA coding downstream 156771 214645 ~ 218875 (+)
AMCG00008372 trmt1 coding downstream 177021 234895 ~ 243054 (+)
G48618 NA non-coding downstream 36775 94649 ~ 97129 (+)
G48631 NA non-coding downstream 146607 204481 ~ 204901 (+)
G48636 NA non-coding downstream 164179 222053 ~ 222787 (+)
G48637 NA non-coding downstream 167391 225265 ~ 225944 (+)
G48647 wdr83 non-coding downstream 193433 251307 ~ 252482 (+)
AMCG00008369 NA other downstream 29443 87317 ~ 94561 (+)
AMCG00008375 cacna1a other downstream 95315 153189 ~ 204395 (+)
AMCG00008376 NA other downstream 202400 260274 ~ 263022 (+)
G48811 NA other downstream 415871 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other downstream 459625 517499 ~ 525325 (+)

Expression


Co-expression Network