AMCG00008367 (cacna1ab)


Basic Information

Item Value
gene id AMCG00008367
gene name cacna1ab
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 127056 ~ 127729 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008367
ATGGCTCGGTTCGGAGACGAGGTGCCGTCCCGCTACGGCGGCGGACCCGGCCAGGGGGGCCCCGGGCGCGGGGGCAGCAGGCAGGGCGGCCCGCCCGGGGCGCAGCGGATGTACAAGCAGTCTATGGCCCAGCGAGCGCGGACGATGGCCCTGTACAACCCCATCCCGGTGCGCCAGAACTGCCTCACCGTCAACCGCTCTCTCTTCATCTTCAGCGAGGACAACATCGTGAGGAAATACGCCAAAAAGATCACAGAGTGGCCATATCCTTTCTCAAACCTGCACCCCTCCCTGTCCACCACCCCCCGACTGCAGgctgctgctgctggtgtgcGAATGCGGTGGGAGACGAGCTGGCCGGGCTCCGTCTCTCCGGTGGGCGGGTGGAGGGGGTGA

Function

symbol description
cacna1ab Enables high voltage-gated calcium channel activity. Acts upstream of or within neuromuscular synaptic transmission; swimming behavior; and thigmotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in Rohon-Beard neurons; atrium; cardiac ventricle; and spinal cord. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 42; hereditary ataxia (multiple); and migraine (multiple). Orthologous to human CACNA1A (calcium voltage-gated channel subunit alpha1 A).

NR:

description
voltage-dependent P/Q-type calcium channel subunit alpha-1A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008367 True 396 mRNA 0.67 2 127056 127729

Neighbor

gene id symbol gene type direction distance location
AMCG00008368 NA coding upstream 15749 97569 ~ 111307 (+)
AMCG00008363 NA coding upstream 56306 60289 ~ 70750 (+)
AMCG00008362 clpp,LOC107590418,LOC107753176,LOC106606781,LOC107724426 coding upstream 69182 55562 ~ 57874 (+)
AMCG00008361 NA coding upstream 83281 41639 ~ 43775 (+)
AMCG00008371 NA coding downstream 86916 214645 ~ 218875 (+)
AMCG00008372 trmt1 coding downstream 107166 234895 ~ 243054 (+)
AMCG00008374 mri1,LOC107594353,LOC107703717,LOC107700835,LOC107709591,LOC106595636 coding downstream 125750 253479 ~ 256222 (+)
AMCG00008373 LOC104964355 coding downstream 142031 269760 ~ 273986 (+)
AMCG00008386 NA coding downstream 180257 307986 ~ 311984 (+)
G48618 NA non-coding upstream 29927 94649 ~ 97129 (+)
G48631 NA non-coding downstream 76752 204481 ~ 204901 (+)
G48636 NA non-coding downstream 94324 222053 ~ 222787 (+)
G48637 NA non-coding downstream 97536 225265 ~ 225944 (+)
G48647 wdr83 non-coding downstream 123578 251307 ~ 252482 (+)
G48716 NA non-coding downstream 129853 257582 ~ 258264 (+)
AMCG00008369 NA other upstream 32495 87317 ~ 94561 (+)
AMCG00008375 cacna1a other downstream 25460 153189 ~ 204395 (+)
AMCG00008376 NA other downstream 132545 260274 ~ 263022 (+)
G48811 NA other downstream 346016 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other downstream 389770 517499 ~ 525325 (+)
G48846 NA other downstream 459551 587280 ~ 588446 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location