AMCG00008368


Basic Information

Item Value
gene id AMCG00008368
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 97569 ~ 111307 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008368
ATGTCGAAAGACCGACCTGGTGTCGCTGCGAGTCGCAGTGTTTATGTGCGTGCGGTCCAGTGTGTGTTTAGCATGTTAAATGTCCACATGCTACACGTGACTCATGCGGTAGTGGGTTCAGGCGGCGCACGGCCGTCTCCATTGTTCACCGGGAGCCCGCCCCCCCAACGACACACGCCCCCTCATTGCTCAGCTGGCACGTCCATCCAAGTGACAAAGGCTCTTCCTGGGTGTTCATTGGCTGTCCATCTGACTTCTCTCACTGGCTCCGCCCCTTCGTGGTACCAACGCTTCCCCTCCATCGCCCCCCGTTCTCAGGTTACCCTGTCAATCAGCTCGGATACGCGCTCTGTGAGGCGAGAGGCGGACCCCGCACGACGCCGCCGCTTCCCCGCTCCTCCCCCGCCGCTTCCTAACTGGGTTCCCGCTCCTGCGCAGCTCGACCCGGCCCAGACTACTGCCTCGGCTCGCTCGCCTTCCTGCTCCACACGGACAAGCATGTCGGAATACAGCGCGGTGCCGCCGCCCGGTGCTCCGGCCCCTCTCGGCGGGCAGCCGGCTCTCTCGGCCGGCGGCGGGATCAAGAAGGACGCCTTCGCGGATGCGGTGCAGAGGGCCCGACAGATCGCAGCAAAGATCGGTGGTGATGCTGGCGCGGCCCCCTTGAACAACAGCAGCTCTGCGGACAGTTTCCCCTTCACTGCGCAGAAACGGCAGCTGGAGGATGCAGAACAGCCAGACAGTAAGAAGATGGCTTCTCAGACGGACCGGGACCAGCCCACCGCCCTGTCGATCGGAGCTCAACTGGCAGCCATTTCACAGCAGAGCAGGCCGTCCAGCACCACAGAGGAGTACAGTGTTCCTGATGGCATGGTGGGACTCAtAATTGGTCGAGGAGGAGAGCAGATCAACAAGATCCAGCAGGACTCCGGGTGTAAAGTGCAGATCGCGCCAGaCAGCGGAGGGCTGCCGGACCGGAGTGTCTCTCTGACCGGCTCTCCTGACTCCATACAgaaGGCGAAGATGCTCCTGGATGAGATTGTCTCCCGGGGGAGGGGCGCCCCCCCCTCGTTTCACGAGTCGACCAACGGGCAGAGCGGCTCCGTGCAGGAGATCATGATTCCGGCCGGCAAAGCGGGGCTCATCATCGGCAAGGGCGGTGAGACCATCAAACAGCTGCAGGAGATCCTGCGCGAGAGGGATCACCCCGGTTTCACCGAGAGGAACGAGTACGGCTCCCGCATGGGCGGCggtggaggggggggcagcGGCATCGacGTGCCTGTGCCGCGTCACTCGGTGGGTGTGGTGATCGGACGCAATGATGGCACCGGTCCCGACAAAGTGGCGCACATCATGGGCCCCCCCGAGCGCTGTGAGCACGCCGCCCGCATCATCACCGACCTCCTGCAGAGCATCCGGtcaggCCCCCCAGGCCCTGGCATGCCCCCCGGGGCTCGTGGACGGGGTCGCGGTCAGGGCAACTGGGGCCCCCCAGGGGGGGAGGTCACCTTCTCCATCCCCAGCCACAAGTGTGGGCTGGTCATCGGCAGAGGGGGGGAGAATGTGAAGGCTATTAACCAGCAGACAGGGGCCTTCGTGGAGATCTCGCGCCAGCCCCCCCCCAACGGAGACCCCAACTTCAAGCTGTTCACCATCCGCGGCTCCCCGCAGCAGATTGACCACGCCAAGCAGCTCATCGAGGACAAGATAGAGGCTCCGCTGTGTCCGGTTGGGCCAGGTCCAGGCGGTCCGGGTCCCTCGGGTCCAATGGcggtggccccccacccccccaccaataCCCCCCCCAGGGCTGGGGCAACACCTACCAGCAGCaaggcagcagctgcagcagacCCCAGTGCAGCCTGGGCGGCCTACTACGCCCAGTACTACCAGCAGCCTGGGGCCACAGTACCAGGCCAGCCCCCCGCCGCCCCCTCGGGAGCCCCTTTGCCCACAGACCAGCCCCAGGCCGGTCAAGCCCCTGGAGGCCAGCCAGACTACACCAAGGCCTGGGAGGAGTACTACAAGAAACTGGCCCAGGCAGCCGGCACGGGAGCCCCTGCTTCTGGGGCCCAGACTGACTACAGCGCGGCCTGGGCCGAGTACTACAGACAGCAGGCGGCCTACTATGGACAGACAGGGGGACAGCCGGCCTCACAGACGGCCCCCCCCCCAGGGCAGGGACAGCAGGCGCAGTGAGAGGACCTGGGCGGGCCAGCGACCtcggacagagagagagagagcgacatggacggactgagagagagacagatcaGCACCATTCGGCCACATCCAGCCAGCTGTCTggactttttaatttttgttttgtttttgttaattttttttaactgctgttTTCGTTTATGAGTTCTGTTTGGtgtgaaggggtgggggggctgtggggggtg

Function

GO: NA

KEGG:

id description
K13210 FUBP; far upstream element-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008368 True 2414 mRNA 0.64 19 97569 111307

Neighbor

gene id symbol gene type direction distance location
AMCG00008363 NA coding upstream 26819 60289 ~ 70750 (+)
AMCG00008362 clpp,LOC107590418,LOC107753176,LOC106606781,LOC107724426 coding upstream 39695 55562 ~ 57874 (+)
AMCG00008361 NA coding upstream 53794 41639 ~ 43775 (+)
AMCG00008367 cacna1ab coding downstream 15749 127056 ~ 127729 (+)
AMCG00008371 NA coding downstream 103338 214645 ~ 218875 (+)
AMCG00008372 trmt1 coding downstream 123588 234895 ~ 243054 (+)
AMCG00008374 mri1,LOC107594353,LOC107703717,LOC107700835,LOC107709591,LOC106595636 coding downstream 142172 253479 ~ 256222 (+)
AMCG00008373 LOC104964355 coding downstream 158453 269760 ~ 273986 (+)
G48618 NA non-coding upstream 440 94649 ~ 97129 (+)
G48631 NA non-coding downstream 93174 204481 ~ 204901 (+)
G48636 NA non-coding downstream 110746 222053 ~ 222787 (+)
G48637 NA non-coding downstream 113958 225265 ~ 225944 (+)
G48647 wdr83 non-coding downstream 140000 251307 ~ 252482 (+)
G48716 NA non-coding downstream 146275 257582 ~ 258264 (+)
AMCG00008369 NA other upstream 3008 87317 ~ 94561 (+)
AMCG00008375 cacna1a other downstream 41882 153189 ~ 204395 (+)
AMCG00008376 NA other downstream 148967 260274 ~ 263022 (+)
G48811 NA other downstream 362438 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other downstream 406192 517499 ~ 525325 (+)
G48846 NA other downstream 475973 587280 ~ 588446 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000303_00250393_00261161 KHSRP coding CI01000303 null 250332 ~ 261161 (-)