AMCG00008371


Basic Information

Item Value
gene id AMCG00008371
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 214645 ~ 218875 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008371
GCGCTGGGTCGTACACAGAGCTGCCGACATGTCGCTGGAGGACCCGTTCTTCGTGGTGAAGGGGTGAGCGAGCCTTACATACATGGATCATGAGGtcattcattcactcactcactcattcactcactccGCACGTAGAGGCGAGGCCGGCTCCAGCTGGAGTTTCATGACCGGAAAATAATCCGCAGTTTCCTCGCTGCTCAGGTCTGTTTACAGCTGAACACAGACAGAGCCTCAGGGCTGAACTGTGCTGAGCTGAGATGCAGACCAGTGCACTGAACTGAGATCTATAGACCAGTGCACTGAACTGAGATATATAGACCAGTGCACTGAACTGAGATATATAGACCAGTGTAGTGAACTGAGATATATAGACCAGTGTAGTGAACTGAGCTATATAGACCAGTGTAGTGAACTGAGATATGTAGACCAGTGCACTGAACTGAGATATGTAGACCAGTGCACTGAACTGAAATATATAGACCAGTGTAGTGAACTGAGATATATAGACCAGTGCACTGAACTGAGATCTATAGACCAGTGCACTGAACTGAGATCTATAGACCAGTCCACTGATCTGAGATATATAGACCAGTGCACTGAACTGAGATCTATAGACCAGTGCACTGAACTGAAATATATAGACCAGTGCACTGAACTGAGATATATAGACCAGTGCACTGAACTGAGATATGTAGACCAGTGCACTGAACTGAGATATGTAGACCAGTGCACTGAACTGAGATCTATAGACCAGTGCACTGAACTGAGATATATAGACCAGTGCAGTGAACTGAGATCTATAGACCAGTGCACTGAACTGAGATCTATAGACCAGTGCACTGAACTGTACTGTGTCATAGTGCAGTGTAGTTGTAGAGAGATGTTACAGTGTTGTTTTGCAGGGAGGTGCAGAAGGCACTGGGCCGGGCGCGGGGGCTGTTCGGCCACTGGCAGGAGCTGCTGGACGGGGAGGAGCTGGTCAGCAGAGACGAGCTGGACTGGAGCTGCAATGAGCTGAGGAACTGCCTGCGCTCCATCGACTGGGACCTGGAGGACCTGCAGGAGACCATCTCCATCGTGGAGTCGAACCCACGCAAGTTCCGCCTGGAGGAGCACGAGCTTCAGGAGAGGAGGGAGTTCGTGGACAGGACCCGAGAGGCCGTACAGGAGATGAAGGAGCAGTTGTCCAGCCCTGCAGCGGTGGCCCAGACTGAGAGGAGGACCCGGCAGgCTCTGCTGGGGGTCCCTGGTCCAAGGGCAGGACTGCAGTTAGATCGGTACTCCACTCTGGACCAAAACCTGGGCTCGGCAAACTCTCGCTTTATAGATGACCAGCAGGCCCAGCAACAGCTGATTATCCAGGACCAGGACGAGCAGTTAGAGCTGGTGTCCGGCAGCATCCGCGTCCTGAAGAACATGTCCGGCCGCATCGGGGACGAGCTGGACGAGCAATCGCTaatGCTGGGGGAGTTCAGTGAGGAGATGGAGCAGACCAGCTCACGCATGGACTCTGTGCTGAAGAAGATGGAGAAAGTGTCTCACATGACCagcagcCGGCGGCAGTGGTGTGCGATCGGCGTTCTGGGAGTCATCGTGATAGTTGTGCTCATCCTGATCTTCGCactctgacctttgacccctgaCCTCCTGACTCCACGCCACCTCCCTGCTCGGCCATGTTGGGAGCGCAGAGGTACAGAACCTCGCCCGTCAGCCGTGGCACTGTGGGGGGCAATGATGTCACAGTGgatttctccccctctccctctctttcctcttTAAATGCACTGTGTGCATCACTCTATACGTTTTAATATACAGATACCTATATTTTTATCTATatacactgtatgtatttaatagattcatatatatatatatatatatatatttcttctctctgtgtctctacacaaacacattctttATCTCTGGGAGGCCTGGGAGGTACGCgcgggcgtgtgtgtgtgtgcgcttgtgTATGTCTTtgtctatgtgtctgtctgacagGGAGGGGGtgcaggcgggctgtcatgcaGGGGGTGCAGGTGTGTTCATGGCTTTGAGGCTCTGGTGTGGAGCTGTGTCTGTTCCCTGTGCTGCTGTGGTTGAGGGAACGGAcacctgactgacacacagacacggcaGCGACTGCGCAAGCCAGGGCTCGGCATGAgtgagtgtgattgtgtgtgtctgtagtgtgtgtgtgtgtgtgtgcgcgtgtgcgcgtgcgtgcgtgtgagtgagtgagtgagtgtttacgtatgtgtgtgcgtgtgagtgagtgttGTCAGCAGTGGGAGCTCATGCTGTTGCCCTGTGATTATGGTGCCTTTTGTGGGTCAGAGATGCTGCAGAAAGAACCTCAGACTGGTCTATTGAGAggggaattattattattattatgaggaTTATTATTAGAGGAGCCGCTGTGTAcagctgaagctgaaaatgtacaCGGCCCTCGTCTGAAACAGTTATTCagccatttttaaaacaatatatgaaacTGTATTTAGTCTGTGATGTATATTCAGTTTGTTGAACTCAGacccactgacacacagacagaaacaaagacacacacactcaaagacagacagacagacagacacacacacaaagacagaggcacacacacacagagacacacacacacaccgatggAGACacgacacacagacacccacacacacaatcggTTGAAGACAGTCTGAGTCTCAGCACATCGACAGCCTCGGCACTATCTGACTTGATTATTGTTCTCATTGTCAGTAGAAGTTGATATCTGTTCCTTGTTGTAAGTGTTGTTTTCATGATTAAAGTGAGACGGTACTGACCTCTGACAGGGCTGTCAGAGTGTTTCTTCAACAGcaaagatcaaataaatattttatagtatttGATGTGTATTCTTTTATTCTTGATCTACTTTGCTTTGCCAAACACCTTAATGGCTTTAATGACCAGTAGACAGCagagcccagcccagcccagtccagtACAGTCCGGCGAATGGCTACAATgcctcctgcagcagcagctggatctctcgccctctccctctctgccccctGCACTGTAGTTTACTGCAGCACATGTTGAACAGTGCAGTATACTGCTGTATAGCCTTGTGCAACACAGCTCTGCTCAACCCAAACACATTTCTGATGactggaaatgtgtgtgtgtgtgtgtg

Function

GO:

id name namespace
GO:0048193 Golgi vesicle transport biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008371 True 3205 mRNA 0.50 8 214645 218875

Neighbor

gene id symbol gene type direction distance location
AMCG00008367 cacna1ab coding upstream 86916 127056 ~ 127729 (+)
AMCG00008368 NA coding upstream 103338 97569 ~ 111307 (+)
AMCG00008363 NA coding upstream 143895 60289 ~ 70750 (+)
AMCG00008362 clpp,LOC107590418,LOC107753176,LOC106606781,LOC107724426 coding upstream 156771 55562 ~ 57874 (+)
AMCG00008361 NA coding upstream 170870 41639 ~ 43775 (+)
AMCG00008372 trmt1 coding downstream 16020 234895 ~ 243054 (+)
AMCG00008374 mri1,LOC107594353,LOC107703717,LOC107700835,LOC107709591,LOC106595636 coding downstream 34604 253479 ~ 256222 (+)
AMCG00008373 LOC104964355 coding downstream 50885 269760 ~ 273986 (+)
AMCG00008386 NA coding downstream 89111 307986 ~ 311984 (+)
AMCG00008384 NA coding downstream 108748 327623 ~ 340268 (+)
G48631 NA non-coding upstream 9744 204481 ~ 204901 (+)
G48618 NA non-coding upstream 117516 94649 ~ 97129 (+)
G48636 NA non-coding downstream 3178 222053 ~ 222787 (+)
G48637 NA non-coding downstream 6390 225265 ~ 225944 (+)
G48647 wdr83 non-coding downstream 32432 251307 ~ 252482 (+)
G48716 NA non-coding downstream 38707 257582 ~ 258264 (+)
G48720 NA non-coding downstream 45145 264020 ~ 264390 (+)
AMCG00008375 cacna1a other upstream 10250 153189 ~ 204395 (+)
AMCG00008369 NA other upstream 120084 87317 ~ 94561 (+)
AMCG00008376 NA other downstream 41399 260274 ~ 263022 (+)
G48811 NA other downstream 254870 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other downstream 298624 517499 ~ 525325 (+)
G48846 NA other downstream 368405 587280 ~ 588446 (+)
G49013 NA other downstream 657679 876554 ~ 879513 (+)

Expression


Co-expression Network