AMCG00008372 (trmt1)


Basic Information

Item Value
gene id AMCG00008372
gene name trmt1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 234895 ~ 243054 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008372
tctcgcCTGAACCCGACACGGACATTACATCTCGCGTTTTCTCATCCTCGTCTAGCCTCCTCGGAACGCAGAAAACAAGCAGGCTTCCGTAGTTGCAGTTCTGTAATGTCTGGGCCCATGTGGTAGAGACGGTGAGACGGGCGCTGCGCTACTCcattgaaataataacattactaGAGAacaactaaagaaaataaaataaatacaactacaCAACAACAACGACCCAGAAGCGGAGGAGAGGAATTCCGTGCCCCGCAGACCGTCAGCCCCGCACAGCCCGCTGCGCCGCCCGGgtgtgtgtgtcGCTGAATGCTTGCTGGCACTGCCTGGCTGAGCCGTGTCCTGCGAGTGTGCGTGTCCACTGCGCCTCGGTGTCCCCGGAGAGCCTGGACCGCAGGGGCCACAGCAGCCAGCGCGGCCCGTAGGCGCTTCATGGAGTCCAGCGCCGGCCCCCAGGGCAGCCCGGCTGCACCCACCCCCTCCGGATCAGAGGACAAGGTGGCAGACTCCGCCCCCTCCCAGCTAAACTCCACCACAGGCCCTGCCCTCCCCCCGCCGGGCCTGGGGGACAGTCCCGCCCCCTCGTCTGAAGCCGCACCTCCAACCAGCCGATTGGAGGATGTGCAGCCCGGCTCCTTCCCTCTGGACCAGGACACGCCCCtggaggctgtgctgctggcgGGGGAGACAGTGGTGCGGGAGGGCCGGGCGGTCATCGTGTTCCCCAGTGCCAACGAGGTTTTCTACAACCCTGTGCAGGAGTTCAACCGTGACCTGACcTGTGCAGTGGTCACAGAGTATGCACGGGAGCATCTGGCTGCCAAAGGGGTGTACGTGGTGGTGCCGGGGGAGGAGGGTCGCCTGGTCGAGGGTCTCCGGGTGCTGGAGGGCCTGGCTGCGTCAGGACTGCGCTCGGTGCGTTTTGGGCTGGAGGTCCCGGGGCTGCGCAGCATCACGGCCAATGACTGCTCCGCCCGCGCAGCCGCCCTGATCGCCCGCAACGCCCAGCTCAACCGACTGCAGGGGCTGCTGACCGCTAGCCAGCGTGATGCAAGCCCCGCCCCCTTCCTGGATGCTGCTGTGCAGGCCGTGAGCgaaggagggcTGCTGTGTGTGACGTGTACCGACATGGCAGTGATGGCGGGGAACAGTGGGGAGACCGTCAGTGTGGATTTCTACATCCGCGTGTTTGTGCGAGTGCACAGCGGCCAGGCGCGGGTCAAGAGCTCTGCCAGtaaGCAGGCCCTGTTCGTGGGGCGTGTGTTGGCCGCCGTGTCGGGGAACCCGTCTCGCTTCGGGACGTCCCGGCGCATCGAGGGCATGCTGAGCATGGTGACTGAGGAGCTGCAGGATGTTCCTCTGTACTACACCCTGGACAGTATGAGCAGCACCCTCCACTGCAACACCCCCTCTCTGCTACAGGCCAGGTCCGCTCTGCTCCATGCTGGGTACCGCGTGTCTCTGTCCCACGCCTGTAAGAACGCGCTGAAGACCGACGCCCCCCCCAGTGCACTCTGGGACATCATGAGGTGCTGGGAAAAACTGAACCCAGTGAAGAGGGAGAGACTGGCTGAGACGAGCCCCGCCTACCGCATCCTGTCCACGGAGCCCGTtctggaGGCGTGTTTCTCCGTCAGGGAGGATGCCAACCCTCAGTCTCGCCGGCGGCACCTCACTCGGTTCCAGGAGAACCCTCAGGCCAACTGGGGGCCCAAGGCGCGTGCCAAGGCAGGCGGGGGGGTTTCGGAGGAGTTGGAGGACCGCAGGAAGAAGCTGCAGAACAAGAGGAAGCAGCCGAGCGGGGACCGTGCGACACTCAAGAGCTTCCCCTGCAAGCGGTTCAAGCAGGGGACTTGCAATCGCGGAGAGAAGTGCAGCTATTCCCACGACAGCCAGCAGGGGCAGAGCGAGGCAGGCTGCACAGCCGAGTGACAGTCACACCTCCGCCTCACACAAGTGGGGGGTGCGTGcgagtgagagtgtgagagagagtgtgagagggAGTATGagagagcaaaagagagagagtgcgagAGTGGGAtagcgagtgtgtgtgtgtgagagagcgagagagcgcaTGCGCAGACAGTCCGGGGAGAGCATCCTGAATTCATTGgaacttcattttatttttatcctccTCATCATGCTGATCCTGAGTTATTTGTGTTgctcattgaaataaatgcagtggAA

Function

symbol description
trmt1 Predicted to enable tRNA (guanine-N2-)-methyltransferase activity. Predicted to be involved in tRNA N2-guanine methylation. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be active in nucleus. Is expressed in several structures, including head; immature eye; mesoderm; midbrain; and neural plate. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human TRMT1 (tRNA methyltransferase 1).

NR:

description
PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K00555 TRMT1, trm1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008372 True 2199 mRNA 0.62 15 234895 243054

Neighbor

gene id symbol gene type direction distance location
AMCG00008371 NA coding upstream 16020 214645 ~ 218875 (+)
AMCG00008367 cacna1ab coding upstream 107166 127056 ~ 127729 (+)
AMCG00008368 NA coding upstream 123588 97569 ~ 111307 (+)
AMCG00008363 NA coding upstream 164145 60289 ~ 70750 (+)
AMCG00008362 clpp,LOC107590418,LOC107753176,LOC106606781,LOC107724426 coding upstream 177021 55562 ~ 57874 (+)
AMCG00008374 mri1,LOC107594353,LOC107703717,LOC107700835,LOC107709591,LOC106595636 coding downstream 10425 253479 ~ 256222 (+)
AMCG00008373 LOC104964355 coding downstream 26706 269760 ~ 273986 (+)
AMCG00008386 NA coding downstream 64932 307986 ~ 311984 (+)
AMCG00008384 NA coding downstream 84569 327623 ~ 340268 (+)
AMCG00008389 NA coding downstream 98708 341762 ~ 344446 (+)
G48637 NA non-coding upstream 8951 225265 ~ 225944 (+)
G48636 NA non-coding upstream 12108 222053 ~ 222787 (+)
G48631 NA non-coding upstream 29994 204481 ~ 204901 (+)
G48618 NA non-coding upstream 137766 94649 ~ 97129 (+)
G48647 wdr83 non-coding downstream 8253 251307 ~ 252482 (+)
G48716 NA non-coding downstream 14528 257582 ~ 258264 (+)
G48720 NA non-coding downstream 20966 264020 ~ 264390 (+)
G48721 NA non-coding downstream 23520 266574 ~ 266881 (+)
G48796 NA non-coding downstream 184827 427881 ~ 488584 (+)
AMCG00008375 cacna1a other upstream 30500 153189 ~ 204395 (+)
AMCG00008369 NA other upstream 140334 87317 ~ 94561 (+)
AMCG00008376 NA other downstream 17220 260274 ~ 263022 (+)
G48811 NA other downstream 230691 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other downstream 274445 517499 ~ 525325 (+)
G48846 NA other downstream 344226 587280 ~ 588446 (+)
G49013 NA other downstream 633500 876554 ~ 879513 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_06281314_06288766 TRMT1 coding CI01000306 null 6281014 ~ 6289053 (+)