AMCG00008384


Basic Information

Item Value
gene id AMCG00008384
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 327623 ~ 340268 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008384
gacacgCATCCCGGCCCCATCGCTAGTGCGCAGGCGCGTCAGGCCAGCTGAGCCCGAGTTGGTATCGCAGCGACGCCCGGAGCCCACAGACCGTCCGCGGCCGCTTTTGTGTGAGAAGCAGCTCTGCAGGCTGGCAGACACGGCACGGCCACAGCACAGCCAGCGCCACCGACACACCGGACCTGCCCTCGCTGCCTGCCGCTGCACCGTTCTCTCCCCACCGCCAGCCCGGCGCAGAGAGCCCGGCGCGTCCCGTCCAGCGCAGGCCAGCCAGCCGTCCGCAGCACGAGGCTTACATCCCGGACCCACCCGTGACCAGCCCAGTGACCGACGACGCCGGAGCTGCTGGGGGAGATGAAGCCGGATGGGGTTGCCACGGCAGCTATGCAACCTACAGACGTTCTGGAGGCGGGGCCTGTCATCGAGGAGGCGGGGCCTGTCGACAAGACAGCACCTGTAGGGGAGCAGCCTCCAAAGGCAGAGACCCCGCCCCCCTCGGAGCAGCCAGTTGTCGCACAGCAGCCGACTGCAACAGAGACGGTGCCCTCTGAGGCCAAGGAGGGGAACAGCAAGCCCGCCACCCCTAAATCCAAGACAAAAGGCCCGGCCGCAGGTCCCGCCAAACCGAAGCCCGGTACCACTGTGGGGAAGACGGCCGCAGCCTCCCGACCTGGCACAGCCCAGAGCCGCACCCTGAACGGGGTCCAGAAGCCTCTGTCCAACGGGGTGGCCACCAAGAAAGCCAACCCCACTGCGTTGGAGAAGAAGAAGCCCTCCGCCGCCTCCACGGCCACCAAGAGACCTGGCAGCAGTGCACCCGCCTCCCCGGCCGGCACTGCCGCCAAGGCAGCCGACAGGAAGCCCGTGGGAGCCCCCCGCCCCGCCTCGGCTCCCGCACCCGGGACCAATGGGGTGAAGACTGGGGTGGCAGCGGCCCAGCCCAGCCGGAAGGTGCCTGGAGTCACCAACACTGCCAGGGTGCGGCCCAACACTGCCGgtcCCAGACCCAGCTCCACTGTGCCTTCCAAAAACACTGCAGCCGTGACCAAACCCGAGAGGCCAGCTGCTTCTAAGACAAGGCCTGCGACCGGCACAGCTGCCCCTCCACGCTCTGTTCCCACTGCGGCTGCATCCAAGCCCACGGCGTCCTCCAGCCGGCCGCCCTCCTCCAGGCCCAGTGCGGCGGCGGCCCCTGGTGGCCGGAGTGCAGCATTGCAGCCCAACAAGAGTGCCACAGCCCCAGCCAAGAAAGATGTCGTCAGCAAGCCAGCGCCAGTGCCCAGGAAACCCGCTGCCGCCACCGCCCCCATCACTAAATGCAACACCACCGCCCCAGCCAAGACAGCCAAACCGGAGCGGACCCGACCTGGTGGTGCGGTCCGGCTTGCGGCTGACCCGGCAAAACGTCCCACCACTGCCACCACGGCCGCCGGGACCAAGACCGGCACCACAGACAAGCCGGCCCGCCCCAAGCCCTGTCCCCCCTCCGCCGCCAGCCCCCGTGCCCCCCCCGGCCGCGCCACCCTCTCCAAGACCACCACGCCCAGTCCGCGCAAACCGGTGGGCAGCAGCGCCCCCATGCCAGTGCGCCGCGCCCCCAAACCCACACAGACCGTCCTGCCACTGGGCGCCGGCGGGCAGCTGGCCCAGAAAACAGAGTTGGCAAAGTCTGACGCAGGCGATGCTGCTGCTGTCGCCCCAGGACCAGAAGCAGAACCCGCCCATGTCCCAGAAGACCTTCAGTTGCCCTCAGTTACCCCTACCCCGGCCGATGTGACTCCTGAGGCTGAACCAGCACGGACCCCGGAAGCCCCCCAGGCCCCAGAGATGGACACGCCTCAGATTGATGCGATTACATCATCTCCTGCCCTCGCAGgcccgccccccccaccactgGTGCCGGAGGGAGCAGTGGATACAGAGACCCCAACCGCCCCAGGACCCTTGCCCACGGCGCCCCCACCTGCAGACCTCACACCAGAGAGCAGGCCCCCCCTGGAAGAGGAGGAGCCCTCTAGCCCCACCCCCCCTGCTGTAACCCCCGAGAGCCCGGCCAGAGCCTGGGAAGGGCTTGAGAAAGAGGAGGGAGTCGGGGAGACCGAGGCGCCAGCAAGGCGAGAAGCTGAGGTGCTGAGGACCTCCCTGCCGACCCCCgttgaggaagaggaggaagagggaggagcCGGAGGCCATCGTGCAGAGATCGAGAAAGCAGAGGAAGAGATCAATGATGACaacgaagaggaggaggaggaagaggaagaagagagggagggcagCCAGCCCGTGTCCGTTTCGGAGATGAGCGAGACGCAGCccactgaggaggaggagggagacgAGGGGTTCGGACACGGGGCGGGGGCGGGCGGAGCCGCAGGGGGCCGAGCAGTAGAGCTCAGCGAGTCCCAGGGGGCCACGCTCACCTCGGAGGTGGACGAGTCCGAGGATGTGAGCTGCAGCCAGCCGGGCCTGTCTGAGCTCAGCGCCCCGCAGTCGGACCCGGGGCTCCTGGAGGGCACGGAGAGCATTGACGAGCTGGGCGACGCCAGCCTGAAGGGTGCGGAGGGGGAGGGTGTGTCTGCCGGGTCACCCGACATAGAGACTGTGCCCGAGATCCCCGCTCATGgagaggaggacgaggaggaggaaggagactACGTGTGCGACATGGATGTGGGCTCGGAGAGGGTGGAGGCCCCGAGGAGGAGgcgggaggaagaggaggaggaggacgacgagGACGTGGAGATGGCCAGCGAGGGCGTGACGGAGAGTGGGCTGGAGAGCTACGGCAACGCGGACGAGGACGACTTCGCTGAGGACGACCGGGCGGTGGACAACCTGAACCGCTGCCCCCCGGCCTCGCCCCCGCTCCCCCCTGCCCAGGCCTGGGCCCACAGCAACCCCTTCTCCCAGCCCTGGGCTCCGCGGCACCTGGAGGACGATGACACCACCCTTACAGACCCGCCCCAGGGCTCCGCCCCCGCGGGCACGCCCCCCCAGTCGCCCGCGCAGGCATGGCTGGAGCACAGCAGTGCTGTTGCTGCCGCCACCCCCCCTCGCGGCCTGGGCGCTGAtctgccctccccctcccatGAACCCGAGTCCTCCCCCATGGAGTGTGTAGCGGGACCTCCCAGCTTCTTCCCCGACTTGCCTTCCTCTGCCACCCAGGGTGCTCTGCGGGCCGATGCGAAGGACGAAATGGTGCCCACTGCACCGACTGctgcctgcctctctccctccccttctgCCCCCGCCGCCCCCACTGTCGCCTGCCTCTCCCCCTCTGCCCCCGGGCCCCTCCCCGAGCACGGGCTGTCCCAGTCCAGTACGCTGAGTGGCGCTGAGCTGGCTGCCCACAGCAGCAGCGAGACGAGCACACCGGAGGAGCTGAGGGACTACGACAGCAGCTCAGGGGTGGAGTCCCGCTCCGAGGACAAGCTGGAGGAGCCGGTGCCCGAGCCGACCCGGGCCCAGACCGCCGCACCCGAGCTGGAGCAGGACCTGGGCATCCACCTGGAGAAGGGAGACgacgaggaggaagaggagggggttGAAGGGGAGGAAGAGGCGGAGACCCTGCCCGCCGATGAGATCCTAGGAGACCCCCCCACAGAGCCTGCCTCCGCCCCCTCGTCCTCCTCATCCTCCGCCGCCTCGGAAGAAGAGGCGAGCGACACGGAGGGCGAGATGCAGATCAACGACCCCGAGGCCGACGGAATCGACAACCTGGCGTTCGAGACGAAGCCGGGCACTGGGGCGGCCGCGGGGCCTGGGGAGACGCCGGCCAATCGCGCTTCCCCGAACTCGGCCGCCGCCCTGTCCTCCGTCCAGGAGGCGGAGGAGACGAGCCTGCCGGGTGAGGGGGATGCAGACGGGGACGCGGACGCTGACTCGGCGGCCTCCTACGTCTTCGACTGCACCTCTGTGTCCAATGCCCAGTCCACCACGGACAGCTGCGGCAAGAGCCCCGGCATCTTCTCCCTGGAGAACGAGGAGCAGCTGCCAGAGGAGGCCAAGGATCTCTCACTCATCCAGGAGCTCAACCTGGCTGTGGGGGAGGGCAAGACCTTGGGTGTGGCTGTGCCGGACGACCTGCCTCTGCTCCCTGCCCTGCAGGGGGTGCCGCCGCCTGGGGAGCGTGGGCCGGAGCTGGAGTACATGCTGTGTGGGAAACCGGGCGCCGGCTCCGACCCAGACTTCCCTGGGAGCGCTGGCAGGGGGGGGTCCTCCTCCTCGCCTCCCGACTCGGCCGAGGAAAACTCGTCCTCGTCCCCGGCCTCCGGGGGGGAGGGCGACCCTGTGCCGTCCTACTACTCAACGGTTTGCGAAAAGACTGATATTGGGCTGGCAGGTAACGTATAAACCCGCGCTCCTTCGCGTCTTAGTGTTGTGCGTTTGTTTCCTGGTCAGAGAGGAAGatgggggaggagagagagagagagagatggggatgAAATGACTGAAAGATCCATAATTGTTCCATGATTGTATCTGTGCCATTCTCCCAGCATTACTATGACCATCTCCATTGATTTTTATACGGCTTGAACTCCTGTATGTGCAATAGCTATTATTACTACTCTTACTACTGCTAGAACTGTCTCCGTTCATTAACACGACACACACCCCCGCTCCCCCAGGCATGGACAGTCCGCCCAGTTTGACAAGCTCTTAAGTGACTGAAAGAaaagatggggaaaaaagaggaaagagagagggattgTATGAACTCTTTTCCTTCTGTATTTATCCTGCTGTTTTTACCGGAGAGAGaagcttttgtatttgttttgaaattataatCTGTACAAATCTGTCCCTAACCCCCCTCTACACACACCCTCTTCGCCTTCATTGTGTaagattaatttgtatttttttttgattgtttgagAATTTACATTAGCTTTGAATAAAGATTAGATATTTAACATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008384 True 4945 mRNA 0.66 5 327623 340268

Neighbor

gene id symbol gene type direction distance location
AMCG00008386 NA coding upstream 15639 307986 ~ 311984 (+)
AMCG00008373 LOC104964355 coding upstream 53637 269760 ~ 273986 (+)
AMCG00008374 mri1,LOC107594353,LOC107703717,LOC107700835,LOC107709591,LOC106595636 coding upstream 71401 253479 ~ 256222 (+)
AMCG00008372 trmt1 coding upstream 84569 234895 ~ 243054 (+)
AMCG00008371 NA coding upstream 108748 214645 ~ 218875 (+)
AMCG00008389 NA coding downstream 1494 341762 ~ 344446 (+)
AMCG00008385 NA coding downstream 12298 352566 ~ 358341 (+)
AMCG00008390 evi5l,LOC108428244,LOC103150094,LOC106922548,LOC108258486 coding downstream 49340 389608 ~ 414932 (+)
AMCG00008391 NA coding downstream 85559 425827 ~ 427345 (+)
AMCG00008396 NA coding downstream 153972 494240 ~ 506457 (+)
G48721 NA non-coding upstream 60742 266574 ~ 266881 (+)
G48720 NA non-coding upstream 63233 264020 ~ 264390 (+)
G48716 NA non-coding upstream 69359 257582 ~ 258264 (+)
G48647 wdr83 non-coding upstream 75141 251307 ~ 252482 (+)
G48637 NA non-coding upstream 101679 225265 ~ 225944 (+)
G48796 NA non-coding downstream 87613 427881 ~ 488584 (+)
G48803 NA non-coding downstream 98715 438983 ~ 444637 (+)
G48806 NA non-coding downstream 116381 456649 ~ 458299 (+)
G48818 NA non-coding downstream 148357 488625 ~ 489866 (+)
G48830 NA non-coding downstream 212199 552467 ~ 554260 (+)
AMCG00008376 NA other upstream 64601 260274 ~ 263022 (+)
AMCG00008375 cacna1a other upstream 123228 153189 ~ 204395 (+)
AMCG00008369 NA other upstream 233062 87317 ~ 94561 (+)
G48811 NA other downstream 133477 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other downstream 177231 517499 ~ 525325 (+)
G48846 NA other downstream 247012 587280 ~ 588446 (+)
G49013 NA other downstream 536286 876554 ~ 879513 (+)
AMCG00008423 NA other downstream 625570 965838 ~ 968583 (+)

Expression


Co-expression Network