AMCG00008395



Basic Information


Item Value
gene id AMCG00008395
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 506943 ~ 509857 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00008395
AAAGATGGCTGCGCCCGTCAGCAGCTGAGATAGATTATATGCAATGTAGGCGACCAGATCAACAGCAGGAAAATGCGACATTTATTCACGGTTATTAAGCGTCTGAGTAACAAAGCGCCACTCCGTGCTCACGTCCTTCGGCCCCTGAAAGCCTCGGGGCTGGTCTGGGAAAGCGGGCGGGCAGGGGACGGCGCCGGGCGGCTTGTGTGCGGCTCGAGCCCCGGCGCCCTGGACAAGGTGCGCGGACAGGTGGAGGTGAGAGAGGAGTTCATCAGCGAGGCCGAGGAGAGCGCactgctgcaggagctggagccGCGCCTGCGCAAGAAGCGCTACGAGTTCGACCACTGGGATGACGCAATCCATGGTTACCGGGAGACGGAGCGCGTGCAGTGGAGCCCGGCGGGGGGGGCAGTGCTGGACCGGGTCAGGGGTGTGGCTTTCCCCGGGGGCGGGCCTCTGCTCGGCCCAGTTCACGTACTGGACTTGGACAAAACCGGCTACATCAAACCACATGTCGACAGCGTCAAgTTCTGTGGCAGCACCATCGCTGGGCTCAGCCTCCTGTCGGACAGTGTGATGCGATTGGTCAGCCAGCAGGACGCGGCTGATTGGGTGGACCTGCTGCTGCCCAGGCGCTCCCTCTACATCATCAGGGGCAGCGCTCGCTACGACTTCACCCACGAGATCCTGCGGGACGAGGAGTCGGTGTTCGGCGGCCTCAGGGTCCCTCGCCAGCGCCGCGTCACCGTCATCTGCAGGAACCTGCCGGCCTGAGCTGAGGGAGCGCAGGGGATGGGAGACGGCGCGACACCCAGGGGGAAGGATAATggataatctctctctctctctgcccctctgtCTAGACTAGGTCTGTCCTGGTTACAGTGTCCTGCTCTGTCCTGCTCAGACTCTGCACTCTACGTCCACAGGCAGAGGTCACTGTGGGGTcatcaggggtcaggggtcagctGCTGATTGGCTATTCAACGCCTTCGAGTATTAAAATCcaagtttgtttaattaaatacatatatatatatgaataatactaataataaagttgtttgtgtttctga

Function


GO: NA

KEGG:

id description
K10769 ALKBH7; alkylated DNA repair protein alkB homolog 7

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00008395 True 1079 mRNA 0.59 4 506943 509857

Neighbor


gene id symbol gene type direction distance location
AMCG00008396 NA coding upstream 486 494240 ~ 506457 (+)
AMCG00008391 NA coding upstream 79598 425827 ~ 427345 (+)
AMCG00008390 evi5l,LOC108428244,LOC103150094,LOC106922548,LOC108258486 coding upstream 92011 389608 ~ 414932 (+)
AMCG00008385 NA coding upstream 148602 352566 ~ 358341 (+)
AMCG00008389 NA coding upstream 162497 341762 ~ 344446 (+)
AMCG00008402 NA coding downstream 30256 540113 ~ 541044 (+)
AMCG00008403 rfx1,rfx1a,LOC108239327,LOC105013142 coding downstream 99176 609033 ~ 629437 (+)
AMCG00008410 NA coding downstream 199391 709248 ~ 712619 (+)
AMCG00008412 NA coding downstream 206238 716095 ~ 719874 (+)
AMCG00008411 NA coding downstream 265534 775391 ~ 778431 (+)
G48818 NA non-coding upstream 17077 488625 ~ 489866 (+)
G48796 NA non-coding upstream 18359 427881 ~ 488584 (+)
G48806 NA non-coding upstream 48644 456649 ~ 458299 (+)
G48803 NA non-coding upstream 62306 438983 ~ 444637 (+)
G48721 NA non-coding upstream 240062 266574 ~ 266881 (+)
G48830 NA non-coding downstream 42610 552467 ~ 554260 (+)
G48915 NA non-coding downstream 120027 629884 ~ 632393 (+)
G48921 NA non-coding downstream 131019 640876 ~ 691037 (+)
G48947 NA non-coding downstream 184611 694468 ~ 696113 (+)
G48961 NA non-coding downstream 238741 748598 ~ 750602 (+)
AMCG00008376 NA other upstream 243921 260274 ~ 263022 (+)
AMCG00008375 cacna1a other upstream 302548 153189 ~ 204395 (+)
AMCG00008369 NA other upstream 412382 87317 ~ 94561 (+)
AMCG00008397 ccdc130 other downstream 7642 517499 ~ 525325 (+)
G48846 NA other downstream 77423 587280 ~ 588446 (+)
G49013 NA other downstream 366697 876554 ~ 879513 (+)
AMCG00008423 NA other downstream 455981 965838 ~ 968583 (+)
G49208 NA other downstream 812954 1322811 ~ 1324269 (+)

Expression



Co-expression Network