AMCG00008396


Basic Information

Item Value
gene id AMCG00008396
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 494240 ~ 506457 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008396
GGAGGATCACGGGGCTGGGGTCACATGAACAGCCTCGCCCTGGGGTTGTTGATGTGTCACATGACAGCGGGCTAGTTGAGAGAATGGCTTCACCGGTGCTGTCAGCTGCCGCGGCGATTTTGCTGCTTCTGTCCGAGGCTGGGGGCTTCCCTGCCCGGGCCCCGACTGCCGAGCCTCCGCGGTGCGGGTAcgagtCCTGTCCCGTGACCCAGCCCTCGATGCTCAATGTCCACATGGTCCCTCACACTCATGATGACGTGGGCTGGCTCAAGACTGTGGACCAGTACTACTACGGAGACCGCAATGAGATCCAGCACGCGGGGGTGCAGTACATCCTGGACTCGGTGGTGCAGGCACTGCAGCAGGACCCCCGGCGGCGCTTCATCTACGTGGAGACGGCCTTCCTGTACCGCTGGTGGAGACAGCAGAGCGCAGAGACGCGGCGCGCCGTCACTCAGCTCATCAGCCAGGGCCGGCTGgagctggtgggggggggctggtgCATGAACGACGAGGCGACGGTGCTGTACAGCGCGGTGATCGACCAGATGACCCTGGGCCTGCGCTTCCTGAATGACACGTTTGGGCGCTGCGGCCGGCCGCGCGTTGCCTGGCACATCGACCCCTTCGGCCACGCCCGGGAGCAGGCCTCGCTGTTTGCACAGGACAAGGCCCAGAGGATGCGCTCGCGGACCATGGAGATGCTGTGGAGGGCGAGCGAGAGCCTGGTGCCGTCCAACGCTGACCTTTTCACTGGCGTGCTGCCCAATGGCTACAACCCCCCGGCCGGATTCTGCTGGGACCAGCTGTGTGACGACCCGCCGATCCGTGATGACCCGGCACTGGAGGACTACAACGTGGACAGCGTGGTCAAGAAATTCCTGCAGGCCGCCCGTGACCAGGCTGCTCTGTACAAGACCAATCACATCATCATGACGATGGGCTCGGACTTCCAGCCGGTGAAGACGGACGATTTCTTCCCCTACGCCGACACTCCGCACAGCTTCTGGACGGGCTACTTCAGCAGCCGGCCGGCGCTCAAACGCTACGAGAGGAAGAGCAATGGCCTGCTGCAGgtgTGTAACCAGCTGGAGGTGCTGGGCGGGGCGGCATCCCGGAGAGGTCCCCATGGCAGTGGAGACAGTGACACGCTCAGGAGGGCGATGGGCGTGGCCCAGCACCATGACGCGGTGGCAGGGACCGAGAAGCAGCACGTTGCCAACGACTATGCCCAGAGACTGGCCAGCGGGTGGGCCCACTGCGAGCCGCTGGTCAGTAACGTTCTGTCGGTCCTGAGTGGCTCAGTGTCCCCTCACTCCTACTGCGGCAGCCTCAACATCAGCGTGTGTCCCGTCTCTGAGGACAACCACCAGtTCTCGGTGACCGTATATAATCCGATGGGCAGTGCGGTCAGTTGGTCAGTGCGGCTTCCTGTCAACGGCTCTCTGTACAGCGTGACGGACCCCCGCGGACAGCCTGTGGACAGCCAGGTGGTCCCGGTGTCGAACTTCACGCGGGCGGTGCGGAGGGACAGGGGCTACGCGGCCTATGAGCTGGTCTTCCCGGCCAGGGTCCCCCCTCTGGGCTTCAGCACCTACTCCGTGTCCCTGCTTCAGAGGAGCTGGCAGGGCCCGCCGCCCCCCCAGCCTGGCGCCCCCCCCTCCATACAGAACGAGacCCCTCTGTTTCAGGAAGTGTATCAGGAGTTCAGCCCCTGGGTGTCGCAGGTGGTGCGTCTGCCCCGGGGGGGGCATCAGCTGGAGCTGGAGTGGACTGTGGGGCCGATCCCCGTGGGGAGGGATTTCCGACCCACCTGGGATCTGAAGCAGACGGAGCCGATCGCTGGGAACTACTACCCTGTCAACACGCGCATCTTCATCAAGCCGGGCGATTACTACGACGGGCTGGTGGTGCGGGGGAAGCTGCTGGTGTCCCTGAGCCCCCCAGCGCTCGCCGCGGACACCCACCGGCCCGAGGCGCACCGTCAGGCCCTGCCCCCCCTGCTCTCACTGCAGCCGGGCAAGACTGTTGCAGGACAGAGACTGGAGGTGAGAGGGGCAGAGAGGAAGACTCCTACAtTCTCTGGGCTGCAGGCCGAGTTGCCCCCCGCTGTCCAGCTGCTCACCTTGTCTCAGTGGGACAGCGAGTCCGTGCTGCTCAGACTGGAGCACCGGTACCAGCGCGGAGAGAGCGTGGCCCACTCCCACCCGGTCACCGTCAACCTGCAGAAGCTGTTCTCTACCCTGGAGGTGGAGGGTGTGTCTGAGATGAGCCTCGCAGCCAATCAGTGGAAAGAAGAGATGACACGTCTGGACTGGAGGGGCGAGACagATGCGAAGCCCCTGCACTCCAGGGAGGGCAGCCCCtcggggtcagaggtcacgcTGCAGCCGATGGAGATCCGGACCTTCCTGCTGAGAGTGCGCCGGCGCTGACCCGCTGCCAAGCAGCTGCCACCGATAATCAATCACAGGAGCAATCACTGATCAGACACTCACTCAGGACATGGGTGGGGGGTTCTACtcctctctctcatccctccgttcctctccctctgtccacCTGTCTCTCTCGCGCGTTTCCTGCACTGTGCAATATGACATTTATAAAAGGACAAAGAGAATGATGAAGACCTTCCTGTTTGTGCCTTTCATCGTGTCTGACACACAGTGCGTCTCACAGCAGGGAGAATGAGCCGCTTGCtgcctttttaattctgttgtgttgttgttttatagaTTCAGAATAAATTGATCACTTTTAATAAAGAACATGAAAAA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0005488 binding molecular_function
GO:0015923 mannosidase activity molecular_function

KEGG:

id description
K12311 MAN2B1, LAMAN; lysosomal alpha-mannosidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008396 True 2780 mRNA 0.63 19 494240 506457

Neighbor

gene id symbol gene type direction distance location
AMCG00008391 NA coding upstream 66895 425827 ~ 427345 (+)
AMCG00008390 evi5l,LOC108428244,LOC103150094,LOC106922548,LOC108258486 coding upstream 79308 389608 ~ 414932 (+)
AMCG00008385 NA coding upstream 135899 352566 ~ 358341 (+)
AMCG00008389 NA coding upstream 149794 341762 ~ 344446 (+)
AMCG00008384 NA coding upstream 153972 327623 ~ 340268 (+)
AMCG00008395 NA coding downstream 486 506943 ~ 509857 (+)
AMCG00008402 NA coding downstream 33656 540113 ~ 541044 (+)
AMCG00008403 rfx1,rfx1a,LOC108239327,LOC105013142 coding downstream 102576 609033 ~ 629437 (+)
AMCG00008410 NA coding downstream 202791 709248 ~ 712619 (+)
AMCG00008412 NA coding downstream 209638 716095 ~ 719874 (+)
G48818 NA non-coding upstream 4374 488625 ~ 489866 (+)
G48796 NA non-coding upstream 5656 427881 ~ 488584 (+)
G48806 NA non-coding upstream 35941 456649 ~ 458299 (+)
G48803 NA non-coding upstream 49603 438983 ~ 444637 (+)
G48721 NA non-coding upstream 227359 266574 ~ 266881 (+)
G48830 NA non-coding downstream 46010 552467 ~ 554260 (+)
G48915 NA non-coding downstream 123427 629884 ~ 632393 (+)
G48921 NA non-coding downstream 134419 640876 ~ 691037 (+)
G48947 NA non-coding downstream 188011 694468 ~ 696113 (+)
G48961 NA non-coding downstream 242141 748598 ~ 750602 (+)
AMCG00008376 NA other upstream 231218 260274 ~ 263022 (+)
AMCG00008375 cacna1a other upstream 289845 153189 ~ 204395 (+)
AMCG00008369 NA other upstream 399679 87317 ~ 94561 (+)
AMCG00008397 ccdc130 other downstream 11042 517499 ~ 525325 (+)
G48846 NA other downstream 80823 587280 ~ 588446 (+)
G49013 NA other downstream 370097 876554 ~ 879513 (+)
AMCG00008423 NA other downstream 459381 965838 ~ 968583 (+)
G49208 NA other downstream 816354 1322811 ~ 1324269 (+)

Expression


Co-expression Network