AMCG00008397 (ccdc130)



Basic Information


Item Value
gene id AMCG00008397
gene name ccdc130
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 517499 ~ 525325 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00008397
atggacaGTTACACCAGCGCCACACGGTCACTGAAGCACACCGCTGCTGTGGGACGGACCTGCACGCTGTCCTGTCGGCGCCCTTTCCCGGCGTCGTACGTGATACGTCACCAGCACGCAGTGTTTACTAGTCCCGGCCGCGGCGTGAACACAGACGAGTCAAAGGGGGAACGTAAAGGAGTGAATAAGTACTACCCCCCCGACTTCGACCCGGCAAAGGTTTGAGATGCCCTACAACATCTGGTGCGATGGCTGCAAGAACCATATTGGAATGGGGGTGCGATACAATGCAGAGAAGAAGAAGGTGGGAAACTATTACACCACACCAATATACAGgTTCCGGATGAAGTGCCACCTGTGTGTGAACTACATCGAGATGCAGACGGACCCGGCGACCTGCGACTATGTCATCGTGAGTGGAGCGCAGCGCAAGGAGGAGCGCTGGGACCCCGAGGACAACGAGCAGATCCTCACCACGGAGCGCAGCGAGAAGGAGAAGTTGGAGACGGACCCTATGTTCAAGCTGGACCATGGCGGGCGGGACCAGGAGAAGCACCGTGCTGCCCTGCCTTCCCTCTCGCAGCTGCAGGAGCATCAGGAGGCCTGGAGGGACGACTTCCGGGTCAACAGCGCCCTCCGCAGGAAGTTCCGGgatgaGAAGAAGGCGCAGGCGGAGGAGGAGGCGAGGGACGATGCCGTTCGCAGGAGAGCTGGTCTGTCCATCCCTCTGGTCCCCGAGTCTGTGGACGACAAAAAGCTGGCCTCCCTGCTGACACTGACCAGCCCGGACTccTATGATCAGAGGCAGCACAGTAAGCGCCGTGAGATCGTGTCTCGCTCCTGGTTCCAGGCCAGCTCCATCCAATCGCCGGCCTCCACCACGCTGCGGCGCCTGGGCCTGAACCTGGGGGCCAAGGGTGGAGCGGGGCGCGCTCCGGGAGCCACCCTCGTATCCAgcagcccccccgcccccctgaTGCTCATCCGCAGGAAGTCGGAGCCCGGAGGGGGGGGCAGCCTGTGCGGGGACGTCCGGCGGAGAAGGAGGTCAGAGCCGGGGGCGGCCGAGGGCAGCGACACTGAAGGTGCACAGACTGAGACTGAGGCACAGTCAGCCGTAGACCAGAGAGCAGAGGACTGTGGGATAGCGGAGGACCAGCAGGACCGCTCCAGCACTGTGACGTCTCTGGTGGCTGATTACAGTGACTCCAGCTCTGAGTCTGagcactgagtgtgtgtgtgtgtgtgtgtgtgtgtgtggggcttggggtgtgtgtggctgtgt
>TU61009
cagacactgacagacagacactcacttGGGCACTCTGACAACATACTCCGTTGAGGACGAACCACTGcttccctgagagagagagaggggcagaaaGAAATATACACAGTTTACTTAGTAATACAGTATATGGTTCAGCATACAGTCCAGCCCAGATTTCTCCCAGCAGGATGCGGCACACTCTGCCGCAGGGCTCAGTGGCCTAGATTATCAGACCCGGTTCTGATCACATTGCCACACTGACCGACTGCCAGTCCggcagtcagacacacacacagcctaccAGCGACGTCATGGTCcacagggtcagaggtcagcagCGTAGACAGGGCTCTGGTGTCTAGGAAGAGAAACAGACTCTTCAAATCCACCGGCTATTAACAACACACTGTAACGGCCCCACTCGGCTGGGCGCCAGGTGTGGAAAGAGCACACCAGAGAAGAACAAATAAAGacagaacaacaaataaataataaagaggaCAGGTAACTTGTGGGTCGTCACCAGGACACGTAGTGAGAGCACGGAAACAGAAAGTAAAGACAGAGGGAAGATCACATGACCTGTACCCTAAACACAGACACCACCATAGATGtgaacacacaaatacatacacacaatcacagataTACAAACCCAGACCCCCacacacacacaaatggacaGTTACACCAGCGCCACACGGTCACTGAAGCACACCGCTGCTGTGGGACGGACCTGCACGCTGTCCTGTCGGCGCCCTTTCCCGGGTGAGTGTCCGGACTGTGGCGGTTTTGTCTAAAGAGAATAAAATCGCTGTCCGCACGACGGCTCACGGCTCCCCGGGTCTGGTTCGCACACAACGTGGTCCTACCGGCAACCGTGGGCACGTTTAGTTCCGC

Function


symbol description
ccdc130 Predicted to be involved in RNA splicing. Predicted to be part of U2-type spliceosomal complex and post-mRNA release spliceosomal complex. Orthologous to human YJU2B (YJU2 splicing factor homolog B).

NR:

description
PREDICTED: coiled-coil domain-containing protein 130

GO: NA

KEGG:

id description
K13115 CCDC130; coiled-coil domain-containing protein 130

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00008397 True 1285 mRNA 0.62 10 519258 525325
TU61009 False 882 lncRNA 0.53 2 517499 519480

Neighbor


gene id symbol gene type direction distance location
AMCG00008395 NA coding upstream 7642 506943 ~ 509857 (+)
AMCG00008396 NA coding upstream 11042 494240 ~ 506457 (+)
AMCG00008391 NA coding upstream 90154 425827 ~ 427345 (+)
AMCG00008390 evi5l,LOC108428244,LOC103150094,LOC106922548,LOC108258486 coding upstream 102567 389608 ~ 414932 (+)
AMCG00008385 NA coding upstream 159158 352566 ~ 358341 (+)
AMCG00008402 NA coding downstream 14788 540113 ~ 541044 (+)
AMCG00008403 rfx1,rfx1a,LOC108239327,LOC105013142 coding downstream 83708 609033 ~ 629437 (+)
AMCG00008410 NA coding downstream 183923 709248 ~ 712619 (+)
AMCG00008412 NA coding downstream 190770 716095 ~ 719874 (+)
AMCG00008411 NA coding downstream 250066 775391 ~ 778431 (+)
G48818 NA non-coding upstream 27633 488625 ~ 489866 (+)
G48796 NA non-coding upstream 28915 427881 ~ 488584 (+)
G48806 NA non-coding upstream 59200 456649 ~ 458299 (+)
G48803 NA non-coding upstream 72862 438983 ~ 444637 (+)
G48721 NA non-coding upstream 250618 266574 ~ 266881 (+)
G48830 NA non-coding downstream 27142 552467 ~ 554260 (+)
G48915 NA non-coding downstream 104559 629884 ~ 632393 (+)
G48921 NA non-coding downstream 115551 640876 ~ 691037 (+)
G48947 NA non-coding downstream 169143 694468 ~ 696113 (+)
G48961 NA non-coding downstream 223273 748598 ~ 750602 (+)
AMCG00008376 NA other upstream 254477 260274 ~ 263022 (+)
AMCG00008375 cacna1a other upstream 313104 153189 ~ 204395 (+)
AMCG00008369 NA other upstream 422938 87317 ~ 94561 (+)
G48846 NA other downstream 61955 587280 ~ 588446 (+)
G49013 NA other downstream 351229 876554 ~ 879513 (+)
AMCG00008423 NA other downstream 440513 965838 ~ 968583 (+)
G49208 NA other downstream 797486 1322811 ~ 1324269 (+)
AMCG00008451 ubl5 other downstream 1099969 1625294 ~ 1628333 (+)

Expression



Co-expression Network