AMCG00008417


Basic Information

Item Value
gene id AMCG00008417
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 806759 ~ 813360 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008417
CGCATTGTTGCCACTGCGCATGCGCGGTGCTGAGCGGGTCCGCTGTGTGTATTGTAGGCGCGGGATGAATTTGAAATAAACCGGGAATAAAAACACGGCGGAGACAAGATGGCGGACAGCGCCGGGTCAGCGGGGAGCGAGGCTCTGtccgaaacacacacacacagTGAAGCGGGTGCCGTGAGAAGCCGCGACTGTGACGTCAGAGGAGTCGTGTTCGATACCCCCGGGGGCAGGAAGAGATTCCCATCCAGGAGCCCCAGCCTGGGGGGGCCGGAGCGCAAATCCCCCCGCACTGGCGTCTCCCCCACAGAGCCGCACGGGGAGAGCAAGGGAGCGGGTCGGGCCAGAGCCCAGGGGACGGGACTGAGCCCTCGGAGTCGCAGGAAGTCCTGGAGGCGGTCGGTCCGGGGCCGGCGCTCGCTGCCTGCCCTCCCCCGAGACTCCTGCGGGCTCTGCCGGGAGATCAGTAAGGATCTGCCGATGAAAGAGAGACTCTCGAAGCTGATGGAGTCTTCAGTGCAGtCTGACAGCAGAGTGCGCCGCCTGGGAGTCACTGCTACAGAAACACCGCAGCCGAGCCGCAGACATGGCCAGgCGGGTGGAGGAGGGGCGGCTGCAGGGCATCCCTCTGGACCCAGCCTGCCTCTCTGAGTCGTCTCAGAGCGCCCTGATCCTGCGCAAGCCCGACTACCACGGCGCCCTCCGCAGGCAGACGCCTGTACTGCAGGCCCTGGAGCTGCTGATGGACGGACACTGCAGGTTTGTCAGAGGGCTGCTGTCCTTCCAGGAGGAAGCGGAGTGGACACTGAAGCACGCCAGCACCCAGAtaaCTTCCAGTGCTTTCCAGGACTTGGAGAGATCGCCGGTCAAGAAGCTGCTCAGCGTGGCAAAgagacacacacacacacacacacacacacagacacttctgTTGCCCTGCattctggtttgtttttccagtcgTGTGCTGCTGGTGTTACTGGCGACTCCTGGAATAAAATATCATGAGAATAAAATCAGTTGTGAAAGAATCATAATAGTGTTGTATTTCAAACTCCAAATCTGTTTGGTGGACAAACACACTGTCATTAAACTGTCcaaccctgctggactggactatgtctctcaggaccagggccgag

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008417 True 1145 mRNA 0.60 9 806759 813360

Neighbor

gene id symbol gene type direction distance location
AMCG00008418 atp13a1 coding upstream 7696 785426 ~ 799063 (+)
AMCG00008411 NA coding upstream 28328 775391 ~ 778431 (+)
AMCG00008412 NA coding upstream 86885 716095 ~ 719874 (+)
AMCG00008410 NA coding upstream 94140 709248 ~ 712619 (+)
AMCG00008403 rfx1,rfx1a,LOC108239327,LOC105013142 coding upstream 177322 609033 ~ 629437 (+)
AMCG00008419 pbx4,LOC103392870 coding downstream 9318 822678 ~ 843135 (+)
AMCG00008429 NA coding downstream 134297 947657 ~ 950842 (+)
AMCG00008424 NA coding downstream 162867 976227 ~ 983656 (+)
AMCG00008431 xab2 coding downstream 172617 985977 ~ 994819 (+)
AMCG00008430 NA coding downstream 197035 1010395 ~ 1033311 (+)
G48996 NA non-coding upstream 22778 765871 ~ 783981 (+)
G48961 NA non-coding upstream 56157 748598 ~ 750602 (+)
G48947 NA non-coding upstream 110646 694468 ~ 696113 (+)
G48921 NA non-coding upstream 115722 640876 ~ 691037 (+)
G48915 NA non-coding upstream 174366 629884 ~ 632393 (+)
G49066 NA non-coding downstream 116346 929706 ~ 930827 (+)
G49069 NA non-coding downstream 119785 933145 ~ 936281 (+)
G49101 NA non-coding downstream 245201 1058561 ~ 1107290 (+)
G49102 NA non-coding downstream 250189 1063549 ~ 1068033 (+)
G49097 NA non-coding downstream 266661 1080021 ~ 1117780 (+)
G48846 NA other upstream 218313 587280 ~ 588446 (+)
G48811 NA other upstream 254853 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other upstream 281434 517499 ~ 525325 (+)
AMCG00008376 NA other upstream 543737 260274 ~ 263022 (+)
AMCG00008375 cacna1a other upstream 602364 153189 ~ 204395 (+)
G49013 NA other downstream 63194 876554 ~ 879513 (+)
AMCG00008423 NA other downstream 152478 965838 ~ 968583 (+)
G49208 NA other downstream 509451 1322811 ~ 1324269 (+)
AMCG00008451 ubl5 other downstream 811934 1625294 ~ 1628333 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other downstream 1117294 1930654 ~ 1936502 (+)

Expression


Co-expression Network