AMCG00008428


Basic Information

Item Value
gene id AMCG00008428
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 928937 ~ 940672 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008428
CTTGCCTGCTGCCACCGTTTGCAGTAGTCGGAGCTGCAGCGTCGAGATGGACAACCGCGGCTACAACACAGGGTACTCCAGTTGGAGCGGGGGTGGCTCTTCCAGCAGGGGCTCGGGCGGCTATGACTCGTATGGGTTCGGCTACGGGAAGGACTCGGACTCGGGTTTCGGCGGGTACGGTGGCGCCCCCCTGCCGAAGCGCGGCCTGTCGGGCGGATCGTCGTCCTCTTTGTCCACCACGGGCACGAGTGCCGACGCGGTCATCGCCAAGATCAACCAGCGCCTGGACATGCTGACCCAGCTGGAGGGCGCGGGGGGCATGAAGGGAGTGGGCCGCAGCGATAGGTTTGACCAATACGAGTCCTTCGACTCTCGGCCCACCGCACTAAACGACCGTGATCTCTACAGATCCGGCTACGGTTACAGTGACGGAGGACCGGACCTAATGCCGGCGCACCGGGGCGGCAGCGCGTACGGTGGACCGGGGAGCTATGACGGCTCCGGGTTTGGATCCGGCAAATCCCACAGCTCGCGGCAGCCGCGGGACGCCTACGGCCAGAGCTGGCCAGGGAGACGCTCCCCTAGGGGCCCGGGGGGCGGCCGAGGTTTTGGGCGCTGGCACGACCCCCCTATGGGCGgccggggggccggggggggccCTCCCTCCTcgggcggcggcggcggcggcaaaCTCCCGTCTCTCCTCTCCCACCACATGTACCCCGAGGGGGGCCCGTTCCACCCCCCCGGAGCGCAGGAGTACGCTCACCCGGGCAAGAGATACGGAGCGGCTGTGGGCACGTGGGCCGGGCGCCAGAGAGTGCGCAAGAGAACGCCCAACCGAGTGAAGATGCAGAAGGAtgggaagaagaagagaaagcaGTCCCTGAGCGCCGCTGACGAGCCCGACAGCAAGATGGGCAAGACTGAGACTGGAGCGGAGTCGGCCAACGAAGCAGAGGAGCCCAGCGTGGAGAACGAGGAAGTGAAGACCAAAGATGAGTCTGAAGGAGCTGCGGAAGGGGAGGATGcgcTGACCATGCAGGAGGAGATCAAGCAGATGAAGAGGAAGCTGCAGGGCCGGCCGCCCGCTCCGGACAAGCCCAAGCCCAAGACCAAGAAGAGGAGCAGCCGCTTCCTGGAGAGGGTGATGTTCGCCTGCTCCGTCTGCAAGTTCCGCTCCTTCTACAACGACGAGATGACCGCCCACCTGGACAGCCGCTTCCACAAGGAGCACTTCAAATACCTGGCCAGCAAGCTGTCCAAGCCCACCACGGACTTCCTGCAGGAATATCTGTCCAACAAGTACAAGAAGACAGAGATGCGCAGGAGCCACATGGAGAACATCAGCGCGGCCATCTGCCAGGTGTACAAGGAGCAGGACCTGACGCGCGACCTGGGCATGGAGCACTTCATGAAGAAGGTGGAGGCGGCCCACTGCGCGGCCTGCGACCTCTTCATCCCCATGCAGCCCAACCTGCTGCAGAAGCACCTCAAGTCCCCCGACCACAACTTCAACCGCAGGGTGAGCGCGGGCGGCGccggggagggggaggggagcgGGAGGGCCTCGGGCGGCGCTTCTGACGCGGTGGCCTTGTCCCTCCGTCCGCAGGGCATGATGGAGCAGTCCAAACGGGCCAGCCTGTCGGTGGCGCGCAGCATCCTCAACCACAAGGTCATCGGCAAGAAGCTGGAGAGCTACCTGAAGGTGAGGAGCGAGGGAGCAGCCCTCCGATCGAGAGTCCCATCCTGGCGTGAGGGAGAAAACCCGTTCACCGGCAACCCCGATGACCCGGACCCGGACGAGTCCATGGCGATGGACGTGACGGAGGGAGAGATGCTGAACGAGAGccagggggagggaggggtggagggagagggggaggaggaggaggaggaggaggcagcggAGGGGGAGGGCAGTGGCGGGATAGCGGGCTGCCTCGGCCCCGGCCCCGTGTTCGCGGCGGCTCTGTCCCCTGGGTTAGCTGGTGACGTTCTGAGCTCTCAACCTACATTCCTGTTCGGggggtttACCGTGCAGgagctgcttctctctcctccacccgaagaagaaaaagatgaaaACGGCTCCGGGCCCGCATCGCGTTCGCAGTCCTCCAGCCAGGGCCACGGACAGGGCCGCAGAGTCCGGAGACACCCTGCACCCCAGCCCTCTAACCCCGTCGAGCAGCTCGGTCACCGACTACCGACGGACGGGTCTGTAAGCCGGCGGCCCCCGGAGCACAATAGCATCATTCACTGGCCCTCCCCGCCCCGTCTCTGA
>TU61333
ggggggaaaACGCAGCCGGGAAAAGCCGAATGACCGCCGCACCTTCACGTAGAATCATTAAaacctcctcttcctcccctccctcGGTTTTCTGAGCGCGTCTCCCTCGCCCCGCAGAGACCCCCACACTCCCCCCCGCCAGCCCCCCCGCTGTGCGACCCGTGCGGCCAATCGGCTAGTTGAGTCTCGCGCGGGGAGGGGGGGTGTCTGCAGGCCGATGGGGTCGccctcccccctctcctctAGATAGCGGGCTGCCTCGGCCCCGGCCCCGTGTTCGCGGCGGCTCTGTCCCCTGGGTTAGCTGGTGACGTTCTGAGCTCTCAACCTACATTCCTGTTCGGggggtttgtgtgtttgtttttcctctatATGACcccagtcctctctctctctgggtgatttttgtaaatattccTGCTTTGGGAGTTTGTGTAAATAGAATATACCCCCCACTGCACACCCACTCCTCCAGAGGTCGCTGTCCTTCAGACCGTGCAGgagctgcttctctctcctccacccgaagaagaaaaagatgaaaACGGCTCCGGGCCCGCATCGCGTTCGCAGTCCTCCAGCCAGGGCCACGGACAGGGCCGCAGAGTCCGGTCACTCCAGTCTCTCTTCACTACTTtcgtttttatgtttgttgctggggggggtgttgggtgtaaaacaacaaaaaaaaaaaagttgcttttcgtttttgtttttttatgatgaaTTAACTGATGTGAATAAATGTCCAgaacctg
>TU61344
GCAGTAGTCGGAGCTGCAGCGTCGAGATGGACAACCGCGGCTACAACACAGGGTACTCCAGTTGGAGCGGGGGTGGCTCTTCCAGCAGGGGCTCGGGCGGCTATGACTCGTATGGGTTCGGCTACGGGAAGGACTCGGACTCGGGTTTCGGCGGGTACGGTGGCGCCCCCCTGCCGAAGCGCGGCCTGTCGGGCGGATCGTCGTCCTCTTTGTCCACCACGGGCACGAGTGCCGACGCGGTCATCGCCAAGATCAACCAGCGCCTGGACATGCTGACCCAGCTGGAGGGCGCGGGGGGCATGAAGGGAGTGGGCCGCAGCGATAGGTGAAGATGCAGAAGGAtgggaagaagaagagaaagcaGTCCCTGAGCGCCGCTGACGAGCCCGACAGCAAGATGGGCAAGACTGAGACTGGAGCGGAGTCGGCCAACGAAGCAGAGGAGCCCAGCGTGGAGAACGAGGAAGTGAAGACCAAAGATGAGTCTGAAGGAGCTGCGGAAGGGGAGGATGcgcTGACCATGCAGGAGGAGATCAAGCAGATGAAGAGGAAGCTGCAGGGCCGGCCGCCCGCTCCGGACAAGCCCAAGCCCAAGACCAAGAAGAGGAGCAGCCGCTTCCTGGAGAGGGTGATGTTCGCCTGCTCCGTCTGCAAGTTCCGCTCCTTCTACAACGACGAGATGACCGCCCACCTGGACAGCCGCTTCCACAAGGAGCACTTCAAATACCTGGCCAGCAAGCTGTCCAAGCCCACCACGGACTTCCTGCAGGAATATCTGTCCAACAAGTACAAGAAGACAGAGATGCGCAGGAGCCACATGGAGAACATCAGCGCGGCCATCTGCCAGGTGTACAAGGAGCAGGACCTGACGCGCGACCTGGGCATGGAGCACTTCATGAAGAAGGTGGAGGCGGCCCACTGCGCGGCCTGCGACCTCTTCATCCCCATGCAGCCCAACCTGCTGCAGAAGCACCTCAAGTCCCCCGACCACAACTTCAACCGCAGGGGCATGATGGAGCAGTCCAAACGGGCCAGCCTGTCGGTGGCGCGCAGCATCCTCAACCACAAGGTCATCGGCAAGAAGCTGGAGAGCTACCTGAAGGGAGAAAACCCGTTCACCGGCAACCCCGATGACCCGGACCCGGACGAGTCCATGGCGATGGACGTGACGGAGGGAGAGATGCTGAACGAGAGccagggggagggaggggtggagg

Function

GO: NA

KEGG:

id description
K15978 AKAP8L, HA95; A-kinase anchor protein 8-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008428 True 2290 mRNA 0.66 15 928937 940672
TU61333 False 758 lncRNA 0.56 1 930057 930814
TU61344 False 1217 TUCP 0.62 12 931892 940652

Neighbor

gene id symbol gene type direction distance location
AMCG00008426 LOC107711252 coding downstream 24561 892663 ~ 904376 (-)
AMCG00008427 NA coding downstream 47325 878985 ~ 881612 (-)
AMCG00008422 NA coding downstream 57088 865868 ~ 871849 (-)
AMCG00008420 NA coding downstream 63566 859125 ~ 865371 (-)
AMCG00008421 NA coding downstream 122735 798076 ~ 806202 (-)
AMCG00008425 NA coding upstream 11459 952131 ~ 954587 (-)
AMCG00008434 LOC105905717 coding upstream 93621 1034293 ~ 1049932 (-)
AMCG00008436 NA coding upstream 117936 1058608 ~ 1064830 (-)
AMCG00008435 NA coding upstream 126810 1067482 ~ 1073437 (-)
AMCG00008437 NA coding upstream 142063 1082735 ~ 1088091 (-)
G49055 NA non-coding downstream 74752 852850 ~ 854185 (-)
G48994 NA non-coding downstream 179049 748591 ~ 749888 (-)
G48988 NA non-coding downstream 204113 723124 ~ 724824 (-)
G48982 NA non-coding downstream 208873 713165 ~ 720064 (-)
G48895 NA non-coding downstream 339004 589615 ~ 589933 (-)
G49129 NA non-coding upstream 23375 964047 ~ 964656 (-)
G49131 NA non-coding upstream 26525 967197 ~ 968594 (-)
G49156 NA non-coding upstream 97833 1038505 ~ 1079956 (-)
G49209 NA non-coding upstream 378938 1319610 ~ 1319871 (-)
G49210 NA non-coding upstream 380091 1320763 ~ 1320979 (-)
G49054 NA other downstream 80891 841883 ~ 848046 (-)
G48989 NA other downstream 201877 724880 ~ 727060 (-)
AMCG00008407 NA other downstream 270467 653379 ~ 658470 (-)
G48905 NA other downstream 310441 615457 ~ 618496 (-)
G48885 NA other downstream 397856 528290 ~ 531081 (-)
AMCG00008452 NA other upstream 689182 1629854 ~ 1655479 (-)
AMCG00008462 NA other upstream 858173 1798845 ~ 1859491 (-)
AMCG00008466 NA other upstream 879102 1819774 ~ 1840099 (-)
G49375 NA other upstream 938949 1879621 ~ 1880962 (-)
AMCG00008474 NA other upstream 1133111 2073783 ~ 2085025 (-)

Expression


Co-expression Network