AMCG00008430


Basic Information

Item Value
gene id AMCG00008430
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1010395 ~ 1033311 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008430
ATGCCGGACAGCCTGGAGACGTTGCAGCCCATGTGGCTGCAACGTCTCCAGGCTGTCCGGCATCGAtttcagcacagagagagaGGGGGGGCGCCGCGGGACAACACCGCCCTGCTGCAGCTCCTGGCCTGCAGGGGGGTGAGCCTCCAGGAGCAGGATGTGCCCGTGACAGAGGCCGACCTGCGGCACAAGCCCATCAAGATGGGCGCTCACTTGGCGGTGATTGACGGGCTGATGTCGCTCTGTGCCATGGAAACGATGAGCGCTGCCAAGATGCCCAGCGGACTGGAGAAGTTCGGCGGGGGCAGCCAGTGGGAGAACGCCGTGCTGTACTGGGTCAACAAGatccgCTACAGGAAAGACAAGATGCTGCCCAAGCAGACGCCCACGTTTCCCCTGGTGGCCAGTGTGAAGGACCTGTCTAACGGCTGTGCCATCGCTGCCCTGGTGCACTTCTATTGCCCCAGCCTGCTCAGACTGGAGGATGTCTGTCTGAAGGACACCATGTCGCTCAACATCATGGCCTTCATGGCGGAGCTGTTTGGCTGGTTTGAGGTGAGGAAGCCGGACTTCGTTCGCCCCAAGGAGCCCGTGGACCTGGAGGACCCGTCCGGACTGAGTGACTGCACAACCCCAACCAGCGCCAACAGCAACAGTGCCTCCCCCGCCTTCGTCTTCAAGCAGCACTTCTTGCCCATCAGCTCCCCCCTGTCGCCGGGCGGCGGGTCAGGAGCGCTCACTCAGTCTACCTCAATGCCACACGTGGAGGGAGTTGGCAAGAGCTGGAGCAAGAAGCAACTCAGccggCCCCTGTCCTCTGCCGTCTCCTTCAGCATCCCGTTCGGCCTGGACAGCGACGTGGACATCGTCATGGGTAACCCGGTGGCCATCACGCGCTCGGTGAGCTCCGACAGTCTGGCCCCCCCCGCCGCCCGCGCCACCTACACCCCCCCCGAGGAGCTGACGGGCTTCCCAGTCAAGGCGGGGGCCGCGGTGCCGGCGCAGGTGGGGCAGAACGGGCCCCTGGTCACCCCGAGAGCATCCTGGGGCACGCAGACGCCCCCCGTGAAGATGTGTGTGAcgaagaagaggagagaggaggaggaggaggaggagccggaGGACCTGGGCGGGCCGGAGGAGGGTCTGGAGAACGGGCTCCTGGATGACGGGGGGCTGTACGGCGACCTGCCCACCATCGAGGAGGCACTGCAGATCATCCAGAGCGGCGGCAAGAGGGAGCCCCGGCTGCGGCCTGACGGGGCCCCCGATGGTTTCTACCTGCACTCGCCCGATGAGCCCGGCAACTACCGGCACCACAGCCCGGGCCCCCCCTCGCGCCTCAGCTCCTCTGCGCCGTCCCGCTCGGGCCTGCTGTACCGGCCGGTGGGGGAGCCGCTGGAGCGtgaccagaaccagaaccagaaccagaaccagaaccagaaccagaaccagaacccgCGTCGGCCACGCCGGACATCCGAGGGCTCGCGTATCTCCCGGGATGATGACTCCGTCTTGCGGGACGGCAGCGTGGACTCCGACGCCTCTGAGGACACCCCGCCCCGGGCGCCCCCCGGGGCCACCCCAGCGGCCAGGGAGGGCCCCAGGGAGGAGGCCCTGTCCTCGTCCTCGGACAGCGGCGTCCGGATGACCAGCTTCGCCGAACGCAGGAAGAAGCTGGGCCCGCCCACACCCGCCACGCCCCCGCCTGCCGAGTCGCCCGAGCCCCTCATGACCAGCTGGGCACAGAGGTCCCACCAGCAGGAGGATGGGGGCGGAACGGGCGAGGGCGAGGACAGCCCCAGCAAGAGCCCAGCCCTCAACACCGAGATGTCCCAGCTGGGCGCCCGGCTGGAGGAGAAGCGGCGTGCGATCGAGGCGCAGAAGAAGCGCATCGAGGCCATCTTCGCCAAGCACCGGCAGCGCCTGGGCAAGAGTGCCTTCCTGCAGCTCAAGAAGCAGCAGCGCCCCGGGGGCGAGACGGAGGCCGAGGGCGAGACCAGCGTCTCCAGCACCGAGGATGACCTGAGTCGGCTCACCCTGGAGGAGCGGCTGGCGAAGATTgaggacgaggaagaggaggcagaCGGCGGGGCGCCGGGCCAGGGGAGCGACGGTAAGGCGGGCAAGCCGGCTGCACGCTCGGAGAAGCAGGTCACCTTCTCCCCGGAGATCAGGAAGCCGGCAGTGGcagcgggaggaggaggagagccagaggaggaggaagagcagccCCAGCTGGGCGAGTACAACCGCGCCGTGTCCAAGCTGAACGCGGCGCTCAGCTCCCTGCAGAGCGACATGCAGCGGCTGTCCGAGCAGCAGCGCCAGCTCATGGTGAAGAAGAAGCCGCCCGCCACCCAGGCCTGGGTCATCCCCGCCAAGCACCCCGCCCCCCGTGTGTCCCGCGAGCCCACCCCCCGCTCCGTCGCCGGCCtggcctcctcttcctcctcgcCCTCCCCCTCGCCCTCCCGGAAGATGGCCCCCCACACCGTCTCCACCCCGCCCAAGTCGCCCCAGCTGCCCCAACGCAGGGCCCAGTCGGCGCCGCCAAAGAGCCCCAAGCACAGCCGGCCGCTGGACCTCAAGTTCCCGCCGCTGACCCGTGTCCTGACCCCGCCCCAGAACGTGGACACCATCCCCCACCTCCGCCGCTTCTCACCCAGCACCTGCCAGGTCCAGACCGCCTCCTCCTTCAGCATCGGCCAGTCCAAGAGCCCCCCGGAGCCCCCCAAGCCCGCCGGGCTCCCGAGCCGGCCGCCGCACGAGGATGACTCCTCCGAGACGGGCTCCAGCGAGGACCCCGCCTTCCCGGGGCTGGAGCTGGAGGGGCCGTCTTCCGGGGCCCGGCCCCATGGCCTGTCCTCGGTCTGGTCATCCTCCTCCACGCGGCGGGAGCGGGGGGGCGGCAGCAGCTCGGGGGCGCCCTCGGAGTGCTCCTTCGAGAGCGACCCCCAGCCCTCGCTCAACGGCAAGCGCAGCAGCCTGATCGAGATCTCGCTGGCCTCCCTGCGCACCGACGAGGGCGAGGACGGGCCCGAGGCCTTCAGCGACTCCATGAGCGACAACACGGAGCCCGAGGGCCAGAGGAGTGGCGTGGGCTTCTTCTACAAGGACGAGGTGCGGCCGGAGGACGAGATGGCCCAGCGCCGGGCCGCGCTGCTGGAGAAGCAGCAGAAGAGAGCGGAGGAGATCAAGAAGCGGAGGCAGTGGcaggagcaggagagggaggccaggcCCTCCACTGCCGAGGACCCCACGCCGCCGCCGCCACCCCCCGCCCCCGAGGGCACCCCCCAGCGGCGCGGTGACTTCACACGGCAGGAGTACCAGCGGCGGCACCAGCTCAAGATCATGGAGGACCTGGACAAGGTTCTGCGGCAGAAGCCCACGACGGTGCGCGGTGTGAAGAAGCAGCGGCCCAAGACCGTGTTCCGGGACGACTCGGTTCTGGCGCGCAGCCCGGTCAAGGGCTTCATGGgttCGAGGCTCAGCAAGGTCTACTCCCACTCCACGCTCTCTCTGTCCACCATGGCCAACGACACGGGCAACTCCCTCTCCGTGAAGAAGTCCCCCAGATCTCATTCGCCCTCGGGCCTGATGTCACCCAGCCGCTTGGCCAGTCAGAACGGAGAGAAGGACTGGGAGAACGCCTCCACCGCCTCCTCTCCCGCGTCCATCCCAGAATACACCGgTCCCAAGCTGTACAAGGAGCCCAGCTTCAAGTCCAACAAGTTCATCATCAACAACGCCctctcccgctgctgcctggcGGGCAAGGTCAACGAGCCGCAGAAGAACAAGATCGTGGAAGAGATGGAGAAGAGCAAGGCCAACCACTTCCTGATCCTGTTCCGCGACTCCTCCTGCCAGTTCCGCGCCGTCTACACCATGAACCCCGAGACGGAGGAGATGACCCGGCTGACGGGCATCGGGCCGCGGGTCATCACCAGCGCCATGGTGGAGGCCATCTACAAATACAGCTCGGACCGCAAGCAGTTCACCGCCATCCCGTCCAAGACCATGTCCATGAGCGTGGACGCCATCACCATCCAGGGCCACCTGTGGCAGAGCAAGCGGCCCACCACCCCCAAGAAGCCGGGCACCCCCAAATAGGGCCCCGAGGGACCCCTCCGACCGAGCGGGCCGGAGGACGGTCTGCACGTCGCGTCCTTCCCCCGCCGTCTCCGCTCCCCTCGACCGCCGTCCTGCTCtgtccttccctctctctctctgtctctctctctccgtccgTGGCGGGTTGTCGGAACAGAAGACACGAGGGAAGCGATGCCCGTCTGGCTCTGGCACCGAGAGCCGTCACTGAATGTACCTTACAGGCCAAATAGGGCGAGGATTTTTATACTCTACTCATTTTTTGTGTCTCCCCCACCCCAGAAGGGACACAGACGCTGGGGGTGGGAACGGATttgtggggttgggggggggtgttgctATGTGTTTAAAAcctacaaaagcaaaaaattcCTCATCGAGGAGCGATTGTCCGACTGTCCTGCCGGCCTGGTCCTCTGGCCTCGGTGTGTGTGTCGAGGTATTTTTCGACGTGTTTATGGAAGAGCGAAGAAGAAAGGAAGACGGAAGGAATCACACTGGGGGCGTGGGGGGGTCTTTCAAACACTGAATTCCACTCGagacttatttttcttcctgaTATTTTTATTCTGTGCGCAAGGattttttccctcctcctcctcctcggtcTCTAGGCTCACTTTGTCGAGTGGTAGACGGCGGTACGCGTGTTCGAAGACACGGGAGGATGAAGTAACACGTATGTTAATATATTAGCGGTGAGTGAAGGCTACTGTCGTTAGGAATCGGATGATCTGTATATAGATGAAGGCTGTGTAGAGACGATTCCTGTcgcgtttgttttttttgttgcttttctcAATGATTTGTATGAACTGGAAATTGCTTTGTAATCTGTAAGCGAGTGAAATGCCTGGCACGAGAGAGACGAggaaggatggatggatggatggatggatggatggatggatggatcgTTAAAATATTTAAGCTGGGAGTTGTTCTTGACTGGGGGGTtataaaacagagaaacaaGACATACAAGACAGTGGACACAAGGTCCCGATTCCTGTCACCCTTCagagcagctgagagagagagtgttattATTGTGATAATGAAGATGATGTTTTGTCATCACTAAGCTGCTCCCCCGCTCGTCTCCAGCCCTGGCCCTCAGCCCCACAATCCTTCCTGTTTTGTTGACGTCTCTGCTCAGCGGTGACGCAGCCTGGTGGTCTGCACTAACAGGGCTGAGGAGTCGGGGGGCTGCCGGCCGTGTCACAGCGGCCCAGCGCAGGGGACAAGAAGTGAACAGGACACTGACGATGCGCTTCACTGGGGCCCCTTTCATTTAGTATCATTGATTCAATTTGATTTGAAGACGGAGCTGGTTGAAAGGCCCGAGCGCTGCAAGGCCTTCTGGGGTTTATCTGAATCATGAACTGCTTAATTGGGCCACCGATTATTAGGCTTAATTAGTCGAGTTCCTGGGATGGGAGGGGGCTAGCGATTGATGTGGACAGACCTGTGCAACCCGCAGGACTGTGACCCCCCACACGCACACGAATCGGCTGTCCTGTTCGCGTGGCTCCTGGAGTACAAACTCTGTCTCTCAAAATACACTAAAAGAGAGAAGATACAGATgcacacagaaaagaaaaaacttataaaaatgaatacattgaacCCTTCCTGTCGGCCCGAGTGCTCGGGCCCGCAGCGTGGGGGTGACCCTGCAGTGGACAGCAGCATCCTGGAGGGCCGGgggcagtgtgtgtttgtgttttcgcGGACTAGGCGGGAGGGGGTTGTGTGCAAGTGTGGTTCCTGGGGG

Function

GO: NA

KEGG:

id description
K17493 CAMSAP; calmodulin-regulated spectrin-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008430 True 5899 mRNA 0.63 16 1010395 1033311

Neighbor

gene id symbol gene type direction distance location
AMCG00008431 xab2 coding upstream 15576 985977 ~ 994819 (+)
AMCG00008424 NA coding upstream 26739 976227 ~ 983656 (+)
AMCG00008429 NA coding upstream 59553 947657 ~ 950842 (+)
AMCG00008419 pbx4,LOC103392870 coding upstream 167260 822678 ~ 843135 (+)
AMCG00008417 NA coding upstream 197035 806759 ~ 813360 (+)
AMCG00008432 NA coding downstream 19284 1052595 ~ 1055755 (+)
AMCG00008433 NA coding downstream 42819 1076130 ~ 1078396 (+)
AMCG00008441 NA coding downstream 206053 1239364 ~ 1245755 (+)
AMCG00008445 NA coding downstream 224210 1257521 ~ 1260216 (+)
AMCG00008446 NA coding downstream 247317 1280628 ~ 1288082 (+)
G49069 NA non-coding upstream 74114 933145 ~ 936281 (+)
G49066 NA non-coding upstream 79568 929706 ~ 930827 (+)
G48996 NA non-coding upstream 226414 765871 ~ 783981 (+)
G48961 NA non-coding upstream 259793 748598 ~ 750602 (+)
G48947 NA non-coding upstream 314282 694468 ~ 696113 (+)
G49101 NA non-coding downstream 25250 1058561 ~ 1107290 (+)
G49102 NA non-coding downstream 30238 1063549 ~ 1068033 (+)
G49097 NA non-coding downstream 46710 1080021 ~ 1117780 (+)
G49107 NA non-coding downstream 53259 1086570 ~ 1087158 (+)
G49110 LOC108429650,LOC105905712,LOC104952487 non-coding downstream 59410 1092721 ~ 1096634 (+)
AMCG00008423 NA other upstream 41812 965838 ~ 968583 (+)
G49013 NA other upstream 130882 876554 ~ 879513 (+)
G48846 NA other upstream 421949 587280 ~ 588446 (+)
G48811 NA other upstream 458489 473745 ~ 551906 (+)
G49208 NA other downstream 289500 1322811 ~ 1324269 (+)
AMCG00008451 ubl5 other downstream 591983 1625294 ~ 1628333 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other downstream 897343 1930654 ~ 1936502 (+)
AMCG00008473 NA other downstream 1029245 2062556 ~ 2075649 (+)
AMCG00008475 NA other downstream 1055169 2088480 ~ 2107792 (+)

Expression


Co-expression Network