Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00008433 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030126.1 |
| NCBI id | CM030126.1 |
| chromosome length | 46242406 |
| location | 1076130 ~ 1078396 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006703 | estrogen biosynthetic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004303 | estradiol 17-beta-dehydrogenase activity | molecular_function |
| id | description |
|---|---|
| K11150 | RDH8; retinol dehydrogenase 8 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00008433 | True | 1032 | mRNA | 0.61 | 7 | 1076130 | 1078396 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00008432 | NA | coding | upstream | 20375 | 1052595 ~ 1055755 (+) |
| AMCG00008430 | NA | coding | upstream | 42819 | 1010395 ~ 1033311 (+) |
| AMCG00008431 | xab2 | coding | upstream | 81311 | 985977 ~ 994819 (+) |
| AMCG00008424 | NA | coding | upstream | 92474 | 976227 ~ 983656 (+) |
| AMCG00008429 | NA | coding | upstream | 125288 | 947657 ~ 950842 (+) |
| AMCG00008441 | NA | coding | downstream | 160968 | 1239364 ~ 1245755 (+) |
| AMCG00008445 | NA | coding | downstream | 179125 | 1257521 ~ 1260216 (+) |
| AMCG00008446 | NA | coding | downstream | 202232 | 1280628 ~ 1288082 (+) |
| AMCG00008444 | col5a3,LOC106593482 | coding | downstream | 237211 | 1315607 ~ 1322747 (+) |
| AMCG00008447 | NA | coding | downstream | 365781 | 1444177 ~ 1444458 (+) |
| G49102 | NA | non-coding | upstream | 8097 | 1063549 ~ 1068033 (+) |
| G49069 | NA | non-coding | upstream | 139849 | 933145 ~ 936281 (+) |
| G49066 | NA | non-coding | upstream | 145303 | 929706 ~ 930827 (+) |
| G48996 | NA | non-coding | upstream | 292149 | 765871 ~ 783981 (+) |
| G48961 | NA | non-coding | upstream | 325528 | 748598 ~ 750602 (+) |
| G49097 | NA | non-coding | downstream | 1625 | 1080021 ~ 1117780 (+) |
| G49107 | NA | non-coding | downstream | 8174 | 1086570 ~ 1087158 (+) |
| G49110 | LOC108429650,LOC105905712,LOC104952487 | non-coding | downstream | 14325 | 1092721 ~ 1096634 (+) |
| G49178 | NA | non-coding | downstream | 84087 | 1162483 ~ 1162690 (+) |
| G49221 | NA | non-coding | downstream | 428317 | 1506713 ~ 1506935 (+) |
| AMCG00008423 | NA | other | upstream | 107547 | 965838 ~ 968583 (+) |
| G49013 | NA | other | upstream | 196617 | 876554 ~ 879513 (+) |
| G48846 | NA | other | upstream | 487684 | 587280 ~ 588446 (+) |
| G48811 | NA | other | upstream | 524224 | 473745 ~ 551906 (+) |
| G49208 | NA | other | downstream | 244415 | 1322811 ~ 1324269 (+) |
| AMCG00008451 | ubl5 | other | downstream | 546898 | 1625294 ~ 1628333 (+) |
| G49298 | s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 | other | downstream | 852258 | 1930654 ~ 1936502 (+) |
| AMCG00008473 | NA | other | downstream | 984160 | 2062556 ~ 2075649 (+) |
| AMCG00008475 | NA | other | downstream | 1010084 | 2088480 ~ 2107792 (+) |
