AMCG00008444 (col5a3,LOC106593482)


Basic Information

Item Value
gene id AMCG00008444
gene name col5a3,LOC106593482
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1315607 ~ 1322747 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008444
GGTCCGAGGGGCTGCCAGGGAAGACGGGGCCGGTGGGGGCCCAGGGTCACCCAGGGAAGTATGGACCCCAGGGGCTGCGAGGCATCCCGGGACCAGCCggagaACAAGGGCTGAACGGCCCCCCAGGACAAACCGGCCCCCCAGGCCCGATGGGCCCCCCCGGTCTGCCCGGACTGAAAGGAGACCCTGGCAGGAAAGGTGACAAGGGCCACGCCGGACTCATCGGTCTGATCGGGCCCCCGGGAGAGATGGGGGAAAAAGGGGACCGAGGTCTGCCGGGGAACCAGGGCACCCAAGGGCCCAAAGGAGACGGGGGCCTCGTTGGCGGTGCTGGTCCCGATGGCCCCCCCGGACTCCCCGGCCTGCCTGGTCCTCTCGgggagaagagagagagagggagagagagagagagaggtatagATAATGGGTATCCAGGCTCAAGTAACATCTCCCCCCCGACACCAGGGTCCCCCGGCCACCATGATCGAGCCCCTCCCCCAGGAGGGCCGCAGGAAGCGCCGGCGCCACACGGGCGACATGGTGCAGGGAGACGTGGTGCAGGGAGACCAGCCGATGGAGGACGAAGCCGGCGGCATGGAGGAGGTGTTCGCCTCGCTCAACTCCATGAAGGCCGAGGTGGAGCACATGCGGAAGCCGCTCGGCACCCAGGAGAGCCCTGCCCGTACATGCAAAGAGCTGCAGATGTGCCACCCTGACTACAAAGACGGCGAGTACTGGATCGACCCGAACCAGGGCTGCCACCGCGACGCCCTCAAGGTGTTCTGTAACTTCACGGCCGAGGGCGAGACCTGCCTGTTCCCAGACAAGAAGGCGGAAGCGGTGAAGCTCGCCGCCTGGAATCGGGAGAAACCCGGCACCTGGTTCAGCCAATTCAAGAAAGGAAAGCAGtTCTCCTACATCGATTCGGAGGGCAACGCCGTGCAGGTGGTTCAGCTGACCTTTCTGAAGCTGCTGAGCGCCACAGCCCACCAGACCTTCACCTACAACTGCCAGAACTCGGCCGGCTGGTACGATAGCAGCTCCCGCAGCCACCAGCACGCGCTGCGCTTCCGTGGCGCCAACGACGAGGAGCTGTCCTTCGCCAAGACGCCCTTCATCAACGCCCTGTACGACGGCTGCCAGTCCCGGAAAGGTTACGAACGGACGGTTCTGGAGATCGACTCTCTGAGAGCCGACCTTCTTCCCATCACCGACGTCGCCGTCACAGACTTTGGCAGCAGCAACCAGAAGTTTGGGTTCGAGCTCGGCCGTGTTTGCTTCAACGGTTAAAGCCCCgggaatgaaaacaaagtagCCAcgtattttttaaagcaataagaCTTTTGTGATTGCCACAagcaatatttatatatctatttttttggttttgtttctaatCTGTGGTGGGTttgtggtatgtttttttttttttgcaagaaaCTAAAGAGAAATGGACAAACCACAGAGGTGAGGTCATTGTCATGTGACTTTGGAACATCCAATAGGATCGGAGCCGCCATGATCCGGTGACAAAGCAGCAACGTGATTGGACAATGCCCTGTGACGATTGGAAATGCACATTTGATAAAGGGAAACTCAACGAcgtatatttttcatttgttttttttgttttgttttttgtcctgtTTTCTGCTGATGTATAAAGTTTGCCTTTTCTCCATAAAGGAGAAATGTTCAGGGCTTCTCCAAAAATATTTTGGGTGGAAAGCTATAGTCAACTACATTAGATCTATGTTGATTTTACTTTCACAAGACAGAAAGAGCAAACGTCACGCGGCAGCAGAAGCTTGTGTTCCCATGTTTTTTGGCGTGACTGTTTGTATTACATTAACATAAAGCTCTTCTCAGAGTATCTCCCACCGGTACACAAACCTGTGTATCAAACTAAGACTTTATTAtcagcaaaacagaaacaaactaaaccTTTTTGGTGCTTGATTGCCTGCCGTCACCGATAACCGAAATACTCTCGGGCAAGGGGGTTAGACTTCAGGTATCCAGGGGGCACTGGCTGTTACTGGCCAATTAAgcatttaagtttaaattaattgattaatttttgactcatttaatgtctttttaaggtccaatacacacacaaaaaaacactaagtCTAGATACAGGCCATGTATATCTGTAAAAATGTGCATTACTCCAATTCAGATAAAGCAAAGACGTGAGAAGCCAGGAGATACTGTGGCACCCTCCCCGTCCCAGAGCTGCACAGTGGTTTACACGCTTGACCTGACCTTAAAGTGAGCGCCTTACTGGACCcgtttacaaacaaaacacaacctgCGACCAATAAGGACTGTAATGAGTAGGGCGTCAGCGTGGGAGAACGCTCTTAAGAATACAACTCCCAGGATTCAGATAAAGTGGACCTGACACTGACGGTACAACACTGCCTCAAGCAtccattgtactgtactgtctgctaaccttgctttttttttgctttttgttttcatgttattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

symbol description
col5a3 An extracellular matrix structural constituent conferring tensile strength. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within cell-matrix adhesion. Located in collagen-containing extracellular matrix.

NR:

description
PREDICTED: collagen alpha-3(V) chain

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008444 True 2549 mRNA 0.53 11 1315607 1322747

Neighbor

gene id symbol gene type direction distance location
AMCG00008446 NA coding upstream 27525 1280628 ~ 1288082 (+)
AMCG00008445 NA coding upstream 55391 1257521 ~ 1260216 (+)
AMCG00008441 NA coding upstream 69852 1239364 ~ 1245755 (+)
AMCG00008433 NA coding upstream 237211 1076130 ~ 1078396 (+)
AMCG00008432 NA coding upstream 259852 1052595 ~ 1055755 (+)
AMCG00008447 NA coding downstream 121430 1444177 ~ 1444458 (+)
AMCG00008449 NA coding downstream 149941 1472688 ~ 1473983 (+)
AMCG00008448 NA coding downstream 162263 1485010 ~ 1486403 (+)
AMCG00008450 olfm2,LOC104918560,LOC100706999 coding downstream 174474 1497221 ~ 1506574 (+)
AMCG00008455 NA coding downstream 388370 1711117 ~ 1716867 (+)
G49178 NA non-coding upstream 152917 1162483 ~ 1162690 (+)
G49097 NA non-coding upstream 197827 1080021 ~ 1117780 (+)
G49110 LOC108429650,LOC105905712,LOC104952487 non-coding upstream 218973 1092721 ~ 1096634 (+)
G49107 NA non-coding upstream 228449 1086570 ~ 1087158 (+)
G49102 NA non-coding upstream 247574 1063549 ~ 1068033 (+)
G49221 NA non-coding downstream 183966 1506713 ~ 1506935 (+)
G49233 NA non-coding downstream 307193 1629940 ~ 1631543 (+)
G49236 NA non-coding downstream 319683 1642430 ~ 1741577 (+)
G49261 NA non-coding downstream 477114 1799861 ~ 1856256 (+)
G49264 NA non-coding downstream 481078 1803825 ~ 1806027 (+)
AMCG00008423 NA other upstream 347024 965838 ~ 968583 (+)
G49013 NA other upstream 436094 876554 ~ 879513 (+)
G48846 NA other upstream 727161 587280 ~ 588446 (+)
G48811 NA other upstream 763701 473745 ~ 551906 (+)
G49208 NA other downstream 64 1322811 ~ 1324269 (+)
AMCG00008451 ubl5 other downstream 302547 1625294 ~ 1628333 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other downstream 607907 1930654 ~ 1936502 (+)
AMCG00008473 NA other downstream 739809 2062556 ~ 2075649 (+)
AMCG00008475 NA other downstream 765733 2088480 ~ 2107792 (+)

Expression


Co-expression Network