AMCG00008446


Basic Information

Item Value
gene id AMCG00008446
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1280628 ~ 1288082 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008446
ATGCCTCCCCGAGATTACCGCGTCCTCGGTGGAGCGTTCTGTGACCCCTCTGCTCTGTTCTGCAGGGTTCCCGTGGACTGGTTGGGCCCCGAGGATCCCCCGGACCTCCAGGACAGCCGGGACCACCAGGTGAGCCTGGCCCCTCCGGGACTGCCTGGCCCTCAAGGCACCATAGGAATGCCCGGAGAAAAGGGTCCCCAAGGCAAGCCCGGCCTCCAGGGACTTCCAGGCATGGACGGCCCGGCGGGTCACCCTGGCAGAGAAGGACCACCTGGAGAAAAGGGGATTGTGGGTCCTTCAGGAGCACAGGGTCCCATTGGCTACCCTGGAACCCGTGGTGTGAAGgGGGCTGACGGAGTGCGAGGCCTGAAAGGGAACAAGGGGGAGAAGGGTGAAGATGGGTTCCCCGGGTTCAAAGGAGACATGGGCCTGAAGGGAGACAGGGTGAGTCCCCGTCCGAAACCCTACGCCCCAGACCAGGGGTCGCTCAGAGGTCAGAGGAGGGCTGAGGCCACCAGCCTGTCAACATCAAGAGAGCGGACTGGGTTTCAGAACCACACTTGTGGCGATGTGGGAGTGATCGGGACCCGGGGGGAGGACGGACCGGAGGGGCCCAAGGGACAGTCCGGGCCCCTGGGGGAGTCCGGGCCCATGGGCACGGCAGGAGAGAAGGGGAAACTCGGGGTGCCGGGATTGCCAGGGTATCCGGGTCGACAGGGAACCAAGGGCTCCGTGGGGTTCCTCGGTGCTGCGGGAGTGGCTGGAGAGAAAGGAAAGAGGTCCCTCACAGCGGTGTCTCATAAGACGCCCACAGACTTTGACACCCTGGGGAATCTGATCCGCCTTATGTTTTCGCTCCAGCGGTTTCGGTTCCCCCTAGTGGTCCGGCGGGGCAGCCAGGGACTGGTGGACAGAGAGGACCCACGGGCTCAGCTGGTCACGATGGCCCGTCCGGACCCACAGGAGAGCGGGGACCGCAAGGCCCGCAGGGACGCAACGGGGAGGCCGGACCCAAAGGGCCGAATATCAATATGTGCTATTACCATCATTGTTATTATcgtctgtattattattgctgtgcgTGTGGAAGTGTGGGCGACGGCGGACGCACGCTGCGCTGTAACGTGTCTCGTGTCGCTTCTCAATGCTGTGCAGGGGCCGGCCGGGAAGGACGGGCTGCCGGGACATCCGGGCCAGAGGGGGGAGCCGggtttCCAAGGCAAGACTGGGCCTCCCGGACCGACTGGAGTGGTGGGACCGCAGACCGAGTCCTTCTCGTCTGTTTCTGGGGGCTTCTCGATGGCAGTTCCCTTCGACCGCCCTTCGGGGGTTCTGAAGGCGCTGAGCCCAGCCTCGGACCCGTGGGCTCGCTGGGGAACGGAGCAGTGTGGTGGGGTTTGGGCTGTACTGGCCGATCAGAAGCCGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008446 True 1428 mRNA 0.64 18 1280628 1288082

Neighbor

gene id symbol gene type direction distance location
AMCG00008445 NA coding upstream 20412 1257521 ~ 1260216 (+)
AMCG00008441 NA coding upstream 34873 1239364 ~ 1245755 (+)
AMCG00008433 NA coding upstream 202232 1076130 ~ 1078396 (+)
AMCG00008432 NA coding upstream 224873 1052595 ~ 1055755 (+)
AMCG00008430 NA coding upstream 247317 1010395 ~ 1033311 (+)
AMCG00008444 col5a3,LOC106593482 coding downstream 27525 1315607 ~ 1322747 (+)
AMCG00008447 NA coding downstream 156095 1444177 ~ 1444458 (+)
AMCG00008449 NA coding downstream 184606 1472688 ~ 1473983 (+)
AMCG00008448 NA coding downstream 196928 1485010 ~ 1486403 (+)
AMCG00008450 olfm2,LOC104918560,LOC100706999 coding downstream 209139 1497221 ~ 1506574 (+)
G49178 NA non-coding upstream 117938 1162483 ~ 1162690 (+)
G49097 NA non-coding upstream 162848 1080021 ~ 1117780 (+)
G49110 LOC108429650,LOC105905712,LOC104952487 non-coding upstream 183994 1092721 ~ 1096634 (+)
G49107 NA non-coding upstream 193470 1086570 ~ 1087158 (+)
G49102 NA non-coding upstream 212595 1063549 ~ 1068033 (+)
G49221 NA non-coding downstream 218631 1506713 ~ 1506935 (+)
G49233 NA non-coding downstream 341858 1629940 ~ 1631543 (+)
G49236 NA non-coding downstream 354348 1642430 ~ 1741577 (+)
G49261 NA non-coding downstream 511779 1799861 ~ 1856256 (+)
G49264 NA non-coding downstream 515743 1803825 ~ 1806027 (+)
AMCG00008423 NA other upstream 312045 965838 ~ 968583 (+)
G49013 NA other upstream 401115 876554 ~ 879513 (+)
G48846 NA other upstream 692182 587280 ~ 588446 (+)
G48811 NA other upstream 728722 473745 ~ 551906 (+)
G49208 NA other downstream 34729 1322811 ~ 1324269 (+)
AMCG00008451 ubl5 other downstream 337212 1625294 ~ 1628333 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other downstream 642572 1930654 ~ 1936502 (+)
AMCG00008473 NA other downstream 774474 2062556 ~ 2075649 (+)
AMCG00008475 NA other downstream 800398 2088480 ~ 2107792 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001742 NA non-coding NC_007112.7 CM002885.2 59252217 ~ 59287507 (-)
grasscarp (Ctenopharyngodon idella) CI01000174_00229653_00259356 COL5A3B coding CI01000174 null 229653 ~ 259739 (+)