AMCG00008452


Basic Information

Item Value
gene id AMCG00008452
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1629854 ~ 1655479 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008452
CAGTTCCTGTGTCTGAAGAACATCAGGACGTTCCTGCTGGCCTGCCAGGAGAAGTTCGGGATGAGGAAGAATGAACTGTTTGAGGCTTTTGACCTGTTTGACGTCCGGGATTTCGCAAAGGTCATTGACACTCTGTCCAGCCTCTCCTACACTGCAATCGCACAGAACCGGGGGATACCGCCCTTCCCGACTGAGGACAGCGTCCCAGATGAGGAGATCTACAGCGGCCTCTCTGATCAGATCGACGACACGGGTGAGGATGACGATGACCTGTACGACTGCGTGGAGGACGAGATCGATGAAGGGGACGAGATCTACGAAGACCTCATGAGGACAGAGCCTTGTGCTGAGACGcAACAGCGCATGACTGAAGTGGACAAGAGGAACTGCTGCCTGCAGGagatcagacagacagaggagaaGTACACTGACACACTAGAGTCTATTCTACAgCACTTTATGAAACCCTTGCAGAAGTTCCTGCAGCCCCAAGACATCGAGAACATATTCATCAACATCGAGGAGCTGGCAGTGACCCACCGCAGTCTGCTGGAGGAGATCCGCGGCTCCATCCTGATGTCCGGGGCAGAGAACCTGTACCAGGTCTTCATCAAATACAAAGAGAGgCTGTTGCCCTACGGTCGGTACTGCAGCCAGGTGGAGGCAGCTACCAAACATCTGGACAAGGTGGCCAGCATGAAGGAGGATGTGCGCATGAAGCTGGAGGAGTGCTCGAAGCGGGCGAACAGCGGGCGGTTCTCTCTCCGGGATCTCCTGATGGTGCCCATGCAGAGAGTCCTCAAATACCACCTGCTCCTACAGGAGCTGGTCAAACACACCACAGATGCCACTGAGAAGGACAACCTTCGCACCGCCTTGGATGCCATGAGGGATTTGGCGCAGTGTGTGAACGAGGTGAAACGGGACAATGAAATTCTCCGCCAGATCACGTCCTTCCAGCTGTCCATCGAGAACATGACGCAGTCCCTGGCGATGTACGCCTTCCTCTTCGACAAAGCCATGCTGGTGTGCAAACGGAAGTCCAGCGACAACATGGAGCTGAAGGAGATCATCAACCTGGAGACGTTCCAATTGCGGGACGAGAGCCCCGGCGAGAAGGACAGCAAAAAGTGGTCACATGTCTTCTTACTGATCGACTCCTATGGGCACACCACCTACGATCTGTACTTCAAAACCAAGGAGCTGAAGAAGAAGTGGCTGGAGCAGTTCGAAATGGCACTGTCGAACATGTTTCCAGAGAACTGCACCGCCAACAGCCACGATTTTCAGATGCACTCCTTTAATGAAACCGCTTCCTGTAAAGCTTGCCAAATGCTCTTAAGAGGCACCTTCTATCAAGGCTATCGCTGTCAGCGCTGTAAAGTCGCAGCCCATAAGGAATGTCTGGGGAGAGTGCCCCCTTGTGGAAGACACTCAGACTTCTCATCCACCATGAAAAAAAATAAGAACAACCGCTCCACACTGCACCGGCAACCGGAAGCAGGCCTGCCCAAGATGGAGGTGTGTCAGGAGTACTATGGGCTGCCCCCCCCGCCCGTGGCGTTCGGCCAGCCCCTGCACCTGTCCATGGGGGACATCGTCGAGCTGACCCGGGCCGAGGCAGAGCTGTCATGGTGGGAGGGCAGGAACATCTCTGCGGGGGAGATGGGCTGGTTTCCCTGCAATAAAGTCCACGGCACCTACCTGGTGCGACAGAGACAGAAGGACGCAGGGGAATACGCCATCAGCATCAAGTACAACGTGGAGATCAAACACATCAAGATCACCACGGCAGAGGGCCTGTTCCGCATCAACGAGAAGAAGGCGTTCAGAGGGTTAATAGAACTCGTGGAGTTCTACCAACGCAACACCCTGAAGGAGTACTTCAAGAGCCTGGACACCACCCTGCAGTTTCCCTACAAAGACCCCGAGCACAGCACCACCACCCCCAGCTCAGAGGGCGGTGTGCGGTACTTCGGCACGGCCAGGGCCCGCTATGACTTCTCAGCCCGTGACCGCTCCGAGCTCTCCCTGATGGAGGGCGACATCATCAAGATCATCTCCAAGAAAGCCCACAATGGCTGGTGGAAAGGAGAGGTGTACGGCCGGGTGGGCTTGTTCCCGTCCAACTACGTCGAGGAGGACTACTCTGACTACTGCTGACGGTCGGACGTCCCCTACGATTCCTGAGCATCCTGAGAAACGCCACGGAAGAGAGTGCCCATCCAAGGGGGACAGTGACGGGTGAAGAGGGGACCCCAGACCTGTCCGATCTAGCTTGAGCCAGAGACTGCCACCTACGAGCCCCACAAAGCCCAGTAGTGtgatacagaaacacacatacacacacacactgactgactgaaggCCACAACCTTCTCTTTCATCGTGCTTTCTTATTTATTCAAGAACATTCTCGCATCATTCCCCTGTGAAGgactttttagtattttttccGATTCTTGacttttttgattttgtgtctTGTTGGTCAGATGTTTGTCTCTCTGTATTCTGTGCGCAGACTGGCTCTCatacagtctgtctgtctgtcagcttTAGCACCAAAGCgttcacttcctgtttatttgcCAATTGACTCTGGGGCTGGGGTCTCTGCTCCACAAAATAGAaccacattaaaaatGAGTAACACCCCGAAGCACCAGATTATTTCCCAGGGGACCCACCTGCTTTTACAACTAACGGTTTTCATCACTGACTCTGTGGGGGGTGGAGATGGCCTGGCTGATTGTTTTttcgagagagggagagtgtgattGAGTGAATGAATGAGAGAGACGGATTCTGATGGTGCACGTTTGGAGTTACACTGGCATTTAACATAGTAGCATTAGTGCAGTAGGCTATTCTCGGCCtgtggtttgtgtgtctgtgtcgaCACCTATTTCTCTTCTCCTTTTTGTCATTTCCCAAATGGTGACCGACTGCACGGCGGTTTGCTTCCCTCAGCTATTTCCAGTTTTAACCATGACTTACAGGAAGAGCGCACCCCATGACCAGCCTTCGTAAGAATCCAGGAACTCGCAGATTTCTGCCCCGTCaggaaaagcagcagcagataattattataattattatttatttcttagcagacacccttatacaGGGCAAAAatagtgcagttcaaggcataaaacatgacaaattccaatttacataacaGTGCAATTGAAAGCATGGGAAATCTATTGATAACCATTGATATCCTCTCTTCTGACCTGATGTGTCTTATCATCCATGTTGCACGGAAGAATCTCACTCTGCTGCACCCTTAGATAGGACAAGTCTGCAAATATAGaggtatatatgtatatacacacacatatatatgtatgtgtgtgtgtgtatctatctatatatacatgcactGAATGTAACTTCCTTATCAGTCAATggcacattcatttaattatatatttattcataggACTGTGATGGTGGGATAATATAGGGTTTtggatacattaaaatattaggACCTGTTATTGTAGGGCCTGCATTtgttcatatattaaaaatgttcgATAATTGTGATTGTCTTAAACAGTAAGATTTCTTTACAACTGGTATTTCCCTGGCACTGGAGacagtttttagttttggttgttttgtgcTGGTTCCTGTGTGCTATCTGACATTCTGAAAAGGTGACAgctacattaaatgtataacttaCACCTGCTTCGATCAGTGTTTTGACTGTGAACATCTCATTTATAAACAATACTACGGTTTTA
>TU61677
TGTCTCCCCTCAGGTACAACGTGGAGATCAAACACATCAAGATCACCACGGCAGAGGGCCTGTTCCGCATCAACGAGAAGAAGGCGTTCAGAGGGTTAATAGAACTCGTGGAGTTCTACCAACGCAACACCCTGAAGGAGTACTTCAAGAGCCTGGACACCACCCTGCAGTTTCCCTACAAAGACCCCGAGCACAGCACCACCACCCCCAGCTCAGAGGGCGGTGTGCGGTACTTCGGCACGGCCAGGGCCCGCTATGACTTCTCAGCCCGTGACCGCTCCGAGCTCTCCCTGATGGAGGGCGACATCATCAAGATCATCTCCAAGAAAGCCCACAATGGCTGGTGGAAAGGAGAGGTGTACGGCCGGGTGGGCTTGTTCCCGTCCAACTACGTCGAGGAGGACTACTCTGACTACTGCTGACGGTCGGACGTCCCCTACGATTCCTGAGCATCCTGAGAAACGCCACGGAAGAGAGTGCCCATCCAAGGGGGACAGTGACGGGTGAAGAGGGGACCCCAGACCTGTCCGATCTAGCTTGAGCCAGAGACTGCCACCTACGAGCCCCACAAAGCCCAGTAGTGtgatacagaaacacacatacacacacacactgactgactgaaggCCACAACCTTCTCTTTCATCGTGCTTTCTTATTTATTCAAGAACATTCTCGCATCATTCCCCTGTGAAGgactttttagtattttttccGATTCTTGacttttttgattttgtgtctTGTTGGTCAGATGTTTGTCTCTCTGTATTCTGTGCGCAGACTGGCTCTCatacagtctgtctgtctgtcagcttTAGCACCAAAGCgttcacttcctgtttatttgcCAATTGACTCTGGGGCTGGGGTCTCTGCTCCACAAAATAGAaccacattaaaaatgAGTAACACCCCGAAGCACCAGATTATTTCCCAGGGGACCCACCTGCTTTTACAACTAACGGTTTTCATCACTGACTCTGTGGGGGGTGGAGATGGCCTGGCTGATTGTTTTttcgagagagggagagtgtgattGAGTGAATGAATGAGAGAGACGGATTCTGATGGTGCACGTTTGGAGTTACACTGGCATTTAACATAGTAGCATTAGTGCAGTAGGCTATTCTCGGCCtgtggtttgtgtgtctgtgtcgaCACCTATTTCTCTTCTCCTTTTTGTCATTTCCCAAATGGTGACCGACTGCACGGCGGTTTGCTTCCCTCAGCTATTTCCAGTTTTAACCATGACTTACAGGAAGAGCGCACCCCATGACCAGCCTTCGTAAGAATCCAGGAACTCGCAGATTTCTGCCCCGTCaggaaaagcagcagcagataattattataattattatttatttcttagcagacacccttatacaGGGCAAAAatagtgcagttcaaggcataaaacatgacaaattccaatttacataacaGTGCAATTGAAAGCATGGGAAATCTATTGATAACCATTGATATCCTCTCTTCTGACCTGATGTGTCTTATCATCCATGTTGCACGGAAGAATCTCACTCTGCTGCACCCTTAGATAGGACAAGTCTGCAAATATAGaggtatatatgtatatacacacacatatatatgtatgtgtgtgtgtgtatctatctatatatacatgcactGAATGTAACTTCCTTATCAGTCAATggcacattcatttaattatatatttattcataggACTGTGATGGTGGGATAATATAGGGTTTtggatacattaaaatattaggACCTGTTATTGTAGGGCCTGCATTtgttcatatattaaaaatgttcgATAATTGTGATTGTCTTAAACAGTAAGATTTCTTTACAACTGGTATTTCCCTGGCACTGGAGacagtttttagttttggttgttttgtgcTGGTTCCTGTGTGCTATCTGACATTCTGAAAAGGTGACAgct

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K05730 VAV; guanine nucleotide exchange factor VAV

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008452 True 3761 mRNA 0.50 26 1629854 1655479
TU61677 False 1939 lncRNA 0.46 5 1629935 1632967

Neighbor

gene id symbol gene type direction distance location
AMCG00008453 pin1 coding downstream 5133 1621464 ~ 1624721 (-)
AMCG00008443 NA coding downstream 425203 1201183 ~ 1204651 (-)
AMCG00008442 NA coding downstream 430429 1193572 ~ 1199425 (-)
AMCG00008438 LOC107378341 coding downstream 515700 1096316 ~ 1114154 (-)
AMCG00008440 NA coding downstream 535321 1094213 ~ 1094533 (-)
AMCG00008456 NA coding upstream 25348 1680827 ~ 1693036 (-)
AMCG00008457 NA coding upstream 85955 1741434 ~ 1765078 (-)
AMCG00008464 NA coding upstream 141087 1796566 ~ 1803085 (-)
AMCG00008465 NA coding upstream 149450 1804929 ~ 1808516 (-)
AMCG00008467 NA coding upstream 154392 1809871 ~ 1811694 (-)
G49232 NA non-coding downstream 1489 1626287 ~ 1628365 (-)
G49211 NA non-coding downstream 305585 1321891 ~ 1324269 (-)
G49210 NA non-coding downstream 308875 1320763 ~ 1320979 (-)
G49209 NA non-coding downstream 309983 1319610 ~ 1319871 (-)
G49156 NA non-coding downstream 549898 1038505 ~ 1079956 (-)
G49346 NA non-coding upstream 82801 1738280 ~ 1739329 (-)
G49389 NA non-coding upstream 399036 2054515 ~ 2066295 (-)
G49393 NA non-coding upstream 412604 2068083 ~ 2075648 (-)
G49394 NA non-coding upstream 414311 2069790 ~ 2070872 (-)
G49414 NA non-coding upstream 581048 2236527 ~ 2236861 (-)
AMCG00008428 NA other downstream 689182 928937 ~ 940672 (-)
G49054 NA other downstream 781808 841883 ~ 848046 (-)
G48989 NA other downstream 902794 724880 ~ 727060 (-)
AMCG00008407 NA other downstream 971384 653379 ~ 658470 (-)
G48905 NA other downstream 1011358 615457 ~ 618496 (-)
AMCG00008462 NA other upstream 143366 1798845 ~ 1859491 (-)
AMCG00008466 NA other upstream 164295 1819774 ~ 1840099 (-)
G49375 NA other upstream 224142 1879621 ~ 1880962 (-)
AMCG00008474 NA other upstream 418304 2073783 ~ 2085025 (-)
AMCG00008491 prkcsh,LOC102779661 other upstream 981436 2636915 ~ 2702422 (-)

Expression


Co-expression Network