AMCG00008462


Basic Information

Item Value
gene id AMCG00008462
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1798845 ~ 1859491 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008462
GACTGCGAACACGGTGATGAGATCATGAGGACCTGCATACTTCACGTGCTGACTCTTGCAAGCTTACTTACACTTTGTACAGTAGCGGCTAACTGCACTGTAACACAGACAACCAGTGGAATGGGCTGGGAGGCAACGGTTGGACCCACAGGCATGCAAAATGATACCTCTCTCCTCTGGCGTGTCAGTAATCTGACTGACTGGAATGAAGAGCCCAGATGCTTCGGAATCTTTCTGACTGAGCCAATTCGGTGTGAGAAAAACCTCAGCATCAGTCTCTACAGTAACCGCACTGATGATGGAGTTCAGTACACGTGTGAGGCAGAGCTGAGACTGGGACCAGGAGGACCACAAGCAAACCAGTCAGAGCCCCTCAACATCACAGTGCTGTATGGGCCAGAGCTATCAAGGTGTCAAGACCGTGTTGAAGTGATGGAGAACCAGACCCTGGGCGACAGTGTTGTCTGCACAGTGCAGGGCAGTCCTGCCCCTGAGACCAGCTGGATCAAGGATGGACGAGAGGTTGACGCCTCTGCTCCCCTGAGCAGGACAGACGGAGGACTGTACACCTATAGAGCCTTCAATACGTATGGATCCACGACTCACAATGTCAGCGTTGAGGTGCTCTacaaacctgtatttaaatcaaaatcagaaGACAGTTTATCCATTTACCAAGGTGAATTGCTAGTGCTAAACTGCTCTGCTCATGGCAACCCACCTCCAAAATATCACTGGAAGTATTCTGAGGCTCTTAACAAAGAGGAAAGAGACATCGGTGACGGCAGCACGTATAACGTCTCTGAAGCCTCACCTGGACAGAGTGGATTTTACACCTGCACTGTGAGCAACAAGCAGGGAGAAACCAGCCAGAAATTCTCAGTGACGGTGAAGGAGAAAGatggTGGCTCTGCAATAATTATTGGGATTATAGtaggaattatttttttaattctgctggtGATACTGATTTGTGCCTTTATAAAGGACTATAGACATAAAAGAGGAAATTATATAATAGTAGGCCAACAAGGTTCACAAGCCAACGGAAGTCTTCTGCACAACGGACACTCAGACGGCATTGCACTGGAGACGCTGCCCACAGTCTGAGCCAACGGCAACTCTCTCCACAGCTTCTAAGAAAGGTACAGATTCCTCACTAGCACTCCAAAAGCCCCTCAATGACTTTATCTAATTCCACTCCAAAAAAGAGACTTTTGCATGACTCTCACAACTGGAAACTACGTGCTGACACTCAAACTTGAATCGTTAGGATTAACCAGACTGTCCTTGCTTCTGTGCCTTTCCCTCACCTTGTATTATGGCATTTCCGAAACACCTACTTCTttgaagggggggtggggggtgaaggAAGTCCAGGGAAAATGAGTCGAGGGTTTAAGAGGTTTGAAGAGAGTTGACAATGTTTTCCTGCCCATGAGAAAACCATGGATCGGAGGTACAAACTGCAAAACCCCCAGGAAGAGACCACATTGGTTGTCGGGAGGAATATGTGAAAATGACACCAGTTTCACAGTTGGCTGAAAAAGCGCTGTAGCTCTCGTGATTCCTGTTCTGGGGGCCGAGACTTTGTTGGCGCATTTCATTTTGCAGGAGCACTTTGAGATATCCAAATtacttcatatttgtttttctgccccCCACAATCCCCCCAGATGGAGCTGGTGTGCTTTGTAATGATGAAATGTGCTGTAGTACAGCTGTGTAAGAAGAGGAAGTCACAATGTGAGTAACGGTGTTGTAATTAAGAGTGGCTGGCGACGGGGGGGGAGTTCTCAGCTGCAGTCCACTGTCGGGAAAATGATCTGCTTGACAAAGCAGATTTCATCATGACTGTGTCACAAGATTTCGAGTGGTAACAGAAATCAATGGTCAACGGCCTCAAAGCGACACAACTGATACAATATCCGCATGCGGTTGCAAAATGAGCTGTGGACAAACTGAAgagtctttttttgtatttatgttattacTTTTCTTGccgtttgcttttctttttaagcaaTGGCATCTTTGCTTTACGCTTGatgattttgcttttattagTGTTTGTTGAACCGACAGGCTGAAGTGCTTTCAATGCACCAGAGGGCTTCAGGATTTCAAACATCTATACACCCGATTGGTCTCACCACAGGTGCAGTATCGACAGTCAGGAAAAGTGCACAACTCTCCCGCTCACTGTATTATGGAGAGTTTAGCAGTTTTTACCATTTTGCTATTTTCTCTTTCCTCAAAGAATCATCTGAGGAAATGTTCTTTACCTACCTACTACCATTGTAGTTCTTCCcccttgaaaataaaaccataaccCTGGATTGTTCTCTTCCTTATCGGGCCCCTTACTGATATTCTGAGCACCACGATTCAGTTTTTCCGAATTCTTCTCGGTTCAGAGTTTCTACCATCAAACTGTATAGAACTGAAGCAATAGCTATTGTGACAACAAAGAATATTGATACATGCAAAGTACAgtgtttcaattttatttatatattgttattttatttttctattatgcAGCAGATGTACAGTTGTTTTGTTCTCGATTTAATTCCATCTCTGTGTACATACTGAATAAAACATCATTGTCATTTGCTGGTGTTGGCATATTTGTATCATGTACGTTCCTGTGGATATCAAAGttcctgttttttaaaagaacgCAGCCAGTGAGAAAATGAGGGACAAAAGCAAAGAATAG
>TU61698
GTGTTTGTGTAGATGGGCCAGAGCTATCAAGGTGTCAAGACCGTGTTGAAGTGATGGAGAACCAGACCCTGGGCGACAGTGTTGTCTGCACAGTGCAGGGCAGTCCTGCCCCTGAGACCAGCTGGATCAAGGATGGACGAGAGGTTGACGCCTCTGCTCCCCTGAGCAGGACAGACGGAGGACTGTACACCTATAGAGCCTTCAATACGTATGGATCCACGACTCACAATGTCAGCGTTGAGGTGCTCTATGGTCCCGAGATATCAGGGTGTCTTGAGAGAGTGGATGTGACAGAGCAGGGCAGTCTAGACAGCATTATTCCCTGTACAGTGCAGAGCAACCCTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008462 True 2725 mRNA 0.44 6 1846916 1859491
TU61698 False 347 TUCP 0.54 2 1798845 1850282

Neighbor

gene id symbol gene type direction distance location
AMCG00008457 NA coding downstream 33767 1741434 ~ 1765078 (-)
AMCG00008456 NA coding downstream 105809 1680827 ~ 1693036 (-)
AMCG00008453 pin1 coding downstream 174124 1621464 ~ 1624721 (-)
AMCG00008443 NA coding downstream 594194 1201183 ~ 1204651 (-)
AMCG00008442 NA coding downstream 599420 1193572 ~ 1199425 (-)
AMCG00008463 NA coding upstream 3123 1862614 ~ 1870208 (-)
AMCG00008470 dnmt1 coding upstream 36671 1896162 ~ 1913755 (-)
AMCG00008469 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 coding upstream 75813 1935304 ~ 1936419 (-)
AMCG00008471 NA coding upstream 91169 1950660 ~ 1951836 (-)
AMCG00008477 NA coding upstream 293120 2152611 ~ 2165650 (-)
G49346 NA non-coding downstream 59516 1738280 ~ 1739329 (-)
G49232 NA non-coding downstream 170480 1626287 ~ 1628365 (-)
G49211 NA non-coding downstream 474576 1321891 ~ 1324269 (-)
G49210 NA non-coding downstream 477866 1320763 ~ 1320979 (-)
G49209 NA non-coding downstream 478974 1319610 ~ 1319871 (-)
G49389 NA non-coding upstream 195024 2054515 ~ 2066295 (-)
G49393 NA non-coding upstream 208592 2068083 ~ 2075648 (-)
G49394 NA non-coding upstream 210299 2069790 ~ 2070872 (-)
G49414 NA non-coding upstream 377036 2236527 ~ 2236861 (-)
G49419 NA non-coding upstream 500369 2359860 ~ 2360112 (-)
AMCG00008452 NA other downstream 143366 1629854 ~ 1655479 (-)
AMCG00008428 NA other downstream 858173 928937 ~ 940672 (-)
G49054 NA other downstream 950799 841883 ~ 848046 (-)
G48989 NA other downstream 1071785 724880 ~ 727060 (-)
AMCG00008407 NA other downstream 1140375 653379 ~ 658470 (-)
G49375 NA other upstream 20130 1879621 ~ 1880962 (-)
AMCG00008474 NA other upstream 214292 2073783 ~ 2085025 (-)
AMCG00008491 prkcsh,LOC102779661 other upstream 777424 2636915 ~ 2702422 (-)
G49605 NA other upstream 1047184 2906675 ~ 2908665 (-)
AMCG00008554 NA other upstream 1571323 3430814 ~ 3871269 (-)

Expression


Co-expression Network