AMCG00008466


Basic Information

Item Value
gene id AMCG00008466
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1819774 ~ 1840099 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008466
aaactccccagcgatgtggctgaagagacaatttgggaacattcaaaaacagactggataggatccttgatcacttaggtattaatggacaccaaacgagcgcgatgggcgaatgggctcctttattatgttcttaaaaaatctgattttgaaatgaaagaaaatgaagaaatggcagaTCTGTGCAATGAAAAGTGTTACTAAAACTTGGTGGGTATGATGATACGTCCTTCCTGTTTCCCTTGGATAGTGTATTTAAGCAATTGACAGCAATCTGTAAAACTCATTTGTCTTCAAGAGAGGGAGTCTCAGAAAAGAAGACAATGGAAATCATGATATTTCGCCATCAGTGCTGTTTGTGGGGTTTCGTCCTTTTGTTCACTGGCTGTGtAGCTGCTGCAGACTGTCCCTTAAAGATTAACCCTGCCAGAGTGGTGGTGAAACATGGAGATTCAGTATCAGTTAACTGCACTGCAACACGGACAACCAGAGGAATGGGCTGGGAGGCAACAGTTGGATCCACAGGCATTAAGATTGGTCCCCAGTCTGTCCTCTGGAATGTCAGCAGTCTGACTGACTGGACTACGGAGCCCAGATGCTTCGTAAACTTTGAGACAGAGCCCAAGCAATGTGAGAAAAAGCTCAACATCAGTCTCTACAAATATCCAGCCAGTGTCTCTATCAGCTCTCAAGCCCGCACTGCTGAGATGAAGAAGAGGGGAGAATATCTGTTGCAGTGTGAGGTCAGGAGCATTGCCCCAGTCCAGTATCTCGCTGTGAACTGGTATAGAGGGGAGGCTTTAATCAACACTGTAAACTTCTCTGATGACACCACTAGAACACCTGTGGATGTTCCTGTTATCTTCATGGTCACACCCACCCGGACAGTGCAGTACTTCTGTGAGGCAGAGCTGAGACTGGGACCAGAAGGACCACAGCCAAACCCTGCTATGAAGTCTGAGGCCCTCGAATTTACAATAATGTTGGTAGTGAAATATGGAGATCCAGTATCGGCCAACTGCACTGTAACACGGACAACAAGAGGAATGGGCTGGGAGGCATCGGTTGGATCCATAGACATGAAAACAGATGTCCAGTCTCTCCTCTGGAGTGTCAGCAGTCTGACTGACTGGACCGCAGAGCCCAAATGCTACGCAAACTTTCAGACTGAGCCCAAGCAGTGTGAGAAAAAGCTCAATGTCACTCTCTACAAGCTGCCGGACAGCGTCTCAATCAGACAAGGAAACAAAACCCAGGAATGGAATCAAACTGAACTCCACTGCGATGTTGTCAATGTGGCTCCTGCTAGATTCCTCACCCTGAAGTGGCTTAAAGGAGAGACACTTGTTGAGGAGACAGACTTTCATGACATCACAGAGAAGGACCCTAGGAATATAACAGAAACTCTGCTGATCACCCTCAGCCGCAGCGACGACGGAGTTCAGTACACGTGTGTGTCAGAGCTGAGACTCGGGCCAGGAGGGCCGCAGCCAAACCCTGTTATGAAGTCTGAGCCCCTCAGCATCATAGTGCTGCCgtTTGGTGCTGAGCTATCAGGGTGTCCAGACCGTGTTGAAGTGATGGAGAACCAGACCCTGGGCGACAGTGTTGTCTGCACAGTGCAGGGCAGTCCTGCCCACGAGACCAGCTGGCTCAAGGATGGACGAGAGGTTGACGCCTCTGCTCCCCTGAGCAGGACAGACGGAGGACTGTACACCTATAGAGCCTTCAATACGTATGGATCCACGACTCACAATGTCAGCGTTGAGGTGCTCTCTGAGTCTGAGCTGCACAATATTTGa
>TU61705
NNNGTCCAAATGGAAACGCCACGCACACAGTGAACGTTGCAGTTGTGTTTGGTGCTGAGCTATCAGGGTGTCCAGACCGTGTTGAAGTGATGGAGAACCAGACCCTGGGCGACAGTGTTGTCTGCACAGTGCAGGGCAGTCCTGCCCACGAGACCAGCTGGCTCAAGGATGGACGAGAGGTTGACGCCTCTGCTCCCCTGAGCAGGACAGACGGAGGACTGTACACCTATAGAGCCTTCAATACGTATGGATCCACGACTCACAATGTCAGCGTTGAGGAGGCGTAACACAGTGCAATCCAGTCAAACAGTTCAAAGGGGCAAATCCAGTAAGAGTTAGAGTAAACAGAAGTAATAGCATGATGATGTTAGGTAGGTAGTTAGCCCCAATCTTAACCTTTGTACTGCGTGTATTTTTCTATGTGTATTTACTTCCAAAGAGCAATGCAGCAGAAATGCTCAGGGAAACCTACAGGGAGAGACAGCAAGGGATTACGGGGGCTGTAGTCCATGGACTTCAAATTGAGGTTTCACTGAAGGACACATGAAACTATAGCTCTCAGGGTCCCACAAGCTAGCCCTCCATAGAAAGGCATCATGGGGGCTGTAGTCTTTCAGCTTCAGTCTTCAAACAAAGAGTATATATAATGGTAACATTATTCAAGATTATGCCATGCAATATGAtcagcaaaaatatattatgatgatgatgatggtgttAGGTATTTATGAAGCCTAATAATAGTGCATATAATTTAGGGGAGGGGggatttataatattatactactgtagcgttatgttgggtgtatttggataagagcatttgggctctgagctgaagcactgatctaaagaatacctctcccccccaaagttatcagatttccttagctcatcagcttggaactggtttgcatcaaagtgacagttgtggggaggatggcaccgagaataggccaaataggttggaattctgctatgagatgtctggataaaggggcctgtaggtgataaaaactctttgaagtggat

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008466 True 1802 mRNA 0.49 7 1821011 1840099
TU61705 False 1032 lncRNA 0.45 3 1819774 1821555

Neighbor

gene id symbol gene type direction distance location
AMCG00008467 NA coding downstream 8080 1809871 ~ 1811694 (-)
AMCG00008465 NA coding downstream 11258 1804929 ~ 1808516 (-)
AMCG00008464 NA coding downstream 16689 1796566 ~ 1803085 (-)
AMCG00008457 NA coding downstream 54696 1741434 ~ 1765078 (-)
AMCG00008456 NA coding downstream 126738 1680827 ~ 1693036 (-)
AMCG00008463 NA coding upstream 22515 1862614 ~ 1870208 (-)
AMCG00008470 dnmt1 coding upstream 56063 1896162 ~ 1913755 (-)
AMCG00008469 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 coding upstream 95205 1935304 ~ 1936419 (-)
AMCG00008471 NA coding upstream 110561 1950660 ~ 1951836 (-)
AMCG00008477 NA coding upstream 312512 2152611 ~ 2165650 (-)
G49346 NA non-coding downstream 80445 1738280 ~ 1739329 (-)
G49232 NA non-coding downstream 191409 1626287 ~ 1628365 (-)
G49211 NA non-coding downstream 495505 1321891 ~ 1324269 (-)
G49210 NA non-coding downstream 498795 1320763 ~ 1320979 (-)
G49209 NA non-coding downstream 499903 1319610 ~ 1319871 (-)
G49389 NA non-coding upstream 214416 2054515 ~ 2066295 (-)
G49393 NA non-coding upstream 227984 2068083 ~ 2075648 (-)
G49394 NA non-coding upstream 229691 2069790 ~ 2070872 (-)
G49414 NA non-coding upstream 396428 2236527 ~ 2236861 (-)
G49419 NA non-coding upstream 519761 2359860 ~ 2360112 (-)
AMCG00008452 NA other downstream 164295 1629854 ~ 1655479 (-)
AMCG00008428 NA other downstream 879102 928937 ~ 940672 (-)
G49054 NA other downstream 971728 841883 ~ 848046 (-)
G48989 NA other downstream 1092714 724880 ~ 727060 (-)
AMCG00008407 NA other downstream 1161304 653379 ~ 658470 (-)
G49375 NA other upstream 39522 1879621 ~ 1880962 (-)
AMCG00008474 NA other upstream 233684 2073783 ~ 2085025 (-)
AMCG00008491 prkcsh,LOC102779661 other upstream 796816 2636915 ~ 2702422 (-)
G49605 NA other upstream 1066576 2906675 ~ 2908665 (-)
AMCG00008554 NA other upstream 1590715 3430814 ~ 3871269 (-)

Expression


Co-expression Network