AMCG00008477


Basic Information

Item Value
gene id AMCG00008477
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2152611 ~ 2165650 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008477
ATGGCGGCCGCCGTGTCCGTTAGTGCCGCAGCCGGAGAAGACAACCCCAGCGTCGGGGCCAGCTTCAAGACCCGTCCGCCCTACGATTACGACCCCATCGCCGAGTACGAGGACTGGGCCTCCGGGGAGGGCGCGGAGCCCGGCGACGAGGAGGCCTGGGCGGGCGAGGAGGGGCCGCGGCGGGGCGAGGAGGAGCAGCCGGCGTTGAGCCCGGCGGAGGTGGAGACCCGGCTGGACAGGACCCGCCGCGAGTTCTACAACCGCCGCAAGATCATCATCAAGAACCTGCCCCCCGACGAGGTCCATGATCTTCTGAGTGACTACGACTTGAAATACTGCTTCGTAGACAAATACAAAGGAACGGCTTTCGTGACGCTACTGAACGGTGAACAAGCCAAGTCTGCCATCAAGGAGTACCACCAGCACTGCCTGCGGGAGCGCGAGATCTCCGTGCAGCTGCAGCCCACGGACGCGCTGCTGTGCATCGCCAACCTGCCCCTGTCCTTCACGCAGCAGCAGTTTGAGGACCTGGTGCGGCCCTTCGGCAACCTGGAGCGCTGCTTCCTGGTGTACAGCGAGAGCACGGGCCGCTCCAAGGGCTACGGCTTCGTGGAGTACATGAAGAAGGACTCGGCCGCCCGCGCCAAGTCGGAGCTCCTGGGCAAGCAGCTGGGCGCCCGTATGCTGTACGTGCACTGGACCGAGGTCAACTCGCTCACCTACCCCCTGCTGCACTCGCGCTGCCTGTGCGTGGACCGGCTGCCCCGCACTCTGCAGCACGCCGAGGACCTCCGCGACATCTTCACCGACTTCCAGCAGCCCAGCTTCTGCCAGCTAGCCCAGGGCCAGGACGGCAGCTTCCGGCGCTTCGCGGTGCTGGAGTTCGAGACGGCCGAGTTGGCGGAGATGGTGCAGAGGAGCAGCGACGGGCTGGCAGTGGGACGGACGCGCATCAGGGTGTCCTTCTGCGCCCCTGGCCCCCCGGGCAGGAGCATGCTGGCCGCGCTGATCGCCGCACAGACCATGGCCCTGAATCGGGGGAAGGGTCTCCTCCCGGAGCCCAATGCCATGCAGATCCTCACCAGCCTGAACAACCCAGCCACCATGAAGCTACTGCTCAACCCCCTGCAACAGGGCAGGAAGCACGGTCTCCTCGGAGCCGCCCCCTCCATGCCCCTCCTCGCCAACCCTGCGCTCACCGCCGCCTTGTTGCAGCTGGTGCTGCAGAACCAGGCCCAGCTCCAGCAGGTGGGGCTCTGTCTACGGTCGGCCTCCCCGCAGACCTGTCCCCCCCAGGCCCGATCAAACCTCCAGGGGGGAGCCTCGGCCTTCCTCATCTTCTCGGTGTCTCCCGCTGGCTTGGGGGGGCACTACCCCCAGACCACCCCTCCCCCCGTGCTCCAGGGCATCGCCAACCCCATCCTTGGCGGCATCCCTCAGCAGCCCGGCGCCGGCCTGCCTGCGGACAGTGGTTCTCTGATCCCGGGGGTGTCCATACTGGGAGAGCCCCCGAAAGACATGAAGATCCCCCAGAACCCCTTCCTCAACCTCTACAGCGCATTCCCTTCGTCGGGCTCAGGTGCCCACTCCAGACCCCATCCCTACCGGAAAAAGCCCTCAGTCTTGGGGAACATGTCCAATCCCAGGAATGCTCAGAACTCCCACTCGGACTTCTCCCCCCCTGCCAGCGTGCGGTACCAAGACTCCTATTCGTACGGCGACTACAAATGGGACCCTGTGTCGCACGCGTACCAGCAGCCCGAGTCCACGCACCCGAGCGCTTCCAGAGGCTACGGCCATCACCGGCAGAAGAACCCGTACCAGTCTGGCTACGCCGAGAGGAGTGGCTATGGGCTGCCGGCAGCGTCCTCCCAGCACCCAGGCTCCCCCCCGGCGTACTTCAGCAGCGCTGTGGGCGCCGCCCTGGAGCCGCCCTATCTCAACAAGGCGGTAGGAATGCCTCCCATGTCCCATACAGGGGGCCTGTACGGCTACTCCTCGCCTCCCGGAAACGTGCTGAAGACGCCGGTCGGGGGCCAGAAGCGCGTCTTCTCTCGCCTCATCCCGTCGCCCGAGCCCAGCCCCGAGGGGGGGTACGTGGGCCAGCACTCGCAGGGCCTGGGGGGGCACTACGCCGACTCCTACCTGAAGCGGAAACGGATATTCTGAGGACTGAGCCTCCGAGGGGAGCGGCGGGGGTGGCAGCAGCgggagagcgagggagagggaggaaaacCAACAAGAACCGGAGAACGCTTTCCCTTGTAAGGATCGTCCCAGCGGCGTAGCGGTGATCCTGACACGAGTGCGGTAGTGCTGTGTGGTGGTCTCGGTTCGGGGGCTTTTCCCAGCGGGGGTTTAGACTCCAGTTGGTTGtgaggtgtgtgtatatactggGAGACTGGTATTAATGCGATTGATTTTCCTCCCTCGGGCTCTAATCCCGCTTCTCCATTTGGACGCGTAAGGTTTCAATTCGACACTTGCCTTGTAATGTGAGgtttaactttaattttatttgtacatgtatattttaagttgggttttatttttgatgttttttgttttacaatttgcCTCATGTTATGcagggattttttatttttattttgaatgaaagcGGTCTAAATCTAATCCAGGATTTCTGGTTATATTTGCTGTCGCCAAACTGACTTGTGTTGGAAGTttctgggttttattttatgccCCTTTAGGCTAAACCCTAATATTTGATGCTTTACTTTGTGTGAAAAtaggggatttttattttattttgcttcccATCTCTTGCTGCCTGTATTTAACAATTTTTAGTTAATGACAGGAagcgtttttattttgtatgttgttcTGTCTCTGTAAATTTAAGTCAACTCgttcacttattttaattttctcccCTATTGACTCTGTTCCGCAGGGTGACAATGCCGTGTATAGTGTACAGCATGTAGTGTCTCGtctagatttagttttttaattcatGTGCAGGAGTAATGGtacacatttctatttttacacaatttatttgATAAACCTCAAGATGCAGTCGTTCTCCTGAATTCGGAGATCTGGAAAAGTTGGAGAGGAAAGCGGGTCGTTTTGCCTTTTCCCCCCCGTCTCTTCCACGGAAGTGAATTCTGGACACCGACTCTTTCCTACAGTTGTGCGCGTCTGAACACAACTGGCTTTTACCTCAGACCCGTAACCAGCCGGTCCCGGAGCGCGTTCTCGCCAGCGGTCCGGTCCTACTCGTGCCTTTCTTCCATATATGAAACGTAACGTTGCCAAACCTCTGCAGTATTCCCAGGTCGGGGGGGTGTTCGAGGGATTTCGGTTGCTGCTCTTCAGACTGTGCCTGTGTCGACGCGGCGAGACCGGCCTCTTCTCCGTCTCTCGGTGCCTCGGcgctcgcctctcgcctctcgtcTTGTTTTAGTGTGACTGCTCTCTTTGTCTGATTTCCAGAGGCCAGTGTCATTTTTGTTCTGTCCCTTTGTGCCCAAGACCATTTTGTATGTCCCCCCACATTGCTCCTCTGTGTCTGGATTTTCTTTCTGAATCCTGTAAGTGTAATGCAAGGCAGCGGAGGGCGAAGAATTAAAAGGCCATCATTTACAACCCAAATAAAGGTGAAAAATCACTTGCGCAAATGACGtcctgttcttgtttttgttctttcgTTCTGAATCTCTGGCACCGGTGGTGATGGTTCAGTTGCACTCAATCGGGCGTGTGGTCAAGTGGGCCGAGTCCTCCCTTCGTTCCCCTCTGTGTTCAGATCACTTCACCTGTTCTTTGCTCTTGCACCTCCTTCCCTGTAGCCTCTGTCTGACACGGTCCATCGCTCTTCAGTCTTTTTTCCACCTCACTCGCAGGCCTTTGTAGAAGAAACGCACACGGTCCTGAGTTGCGGTGCCGTGTTCGCGTGGATCGGGTTTTGTTCGTACACATTAGATTTTCCAAAGGGAGCATTATTGATGCTGTTAAGGTCAGACCTAATTCAGGACTACTTGGTGTTAAATTAGCGACGACTCAAGGGTGAGTTCAACCCCCCAATGCTTGAACCATGGCTAGCCTTCAGTTTAAATCTGGCTCCTCTTCACTAAGTGTTGCCAGTCCTATTCAAAGTGCTTTTATATGGATCGTGTACACCCGTTTGGGTCGTTCTTGGCACTTTATTACAAGTGGTGAAATTAAGATTTAACTGGAATGAAACCTTTCCAAACTCAGATGGTGCTGCAATTTTTctttaaagacttgaatcatTTGTCATCTCGGACTTGAGCCATGCTTGGACCTCCACCCAATCCTCGTCCAGCGTCTTATGACTGGTATTAACATGGAGTGACCGGTCATTAATCGCGCTGTCCGGCTGGCATTATTGCCTCCTTTAGCAGTATTGCCTGACAGCAGTGTATATCCAGTCTCTCTGCTGCTTTAATGCCGATCTAGATTTTCAGAAATCCCGGCCCTGGGTTTTTATTGGGGAAACTTTTAAACCTGTTTTGTCACTCAATGAGTAACGCAGCTGTGTGTTCCTCGACTGGTCCGCCCAGATCCATTAACGCACAGATTTAAATGGGAGTTTTTGACCGACCCACTGGTCCCGCCTTTCTGTGCAGTTTCCTCTTGGACGACACTGGAAGTGAACTCCGGTGGAAGGGGGGAGGCTTGAAATGTCCCAGTCTTTATTTCCAATGCGTGGGATTTTTGTGCTTGTCGAGCGTTTTTAATCTGTAAGGCGTGGCACCGCACACAGCAGTTGGGACGCAGGCGGGGCGGGTGGCATCTCAGGTTTTCTCCGTGGTGTGGTGGTTTTAAAAACCAGGCTTTATTTCCCTGCCCTTCTGtatccccctccccctgctCTGGGTTGTGTGGATCAAGTGGTGCAGCTCTTGTGTATAGTATACTTTCCACTGAAATACTctgctgttatatttttttgtgtgaatgtttttgaacaagtaaatgtaatttaaaattgcaaA

Function

GO: NA

KEGG:

id description
K24999 RAVER1; ribonucleoprotein PTB-binding 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008477 True 4994 mRNA 0.55 14 2152611 2165650

Neighbor

gene id symbol gene type direction distance location
AMCG00008471 NA coding downstream 200775 1950660 ~ 1951836 (-)
AMCG00008469 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 coding downstream 216192 1935304 ~ 1936419 (-)
AMCG00008470 dnmt1 coding downstream 238856 1896162 ~ 1913755 (-)
AMCG00008463 NA coding downstream 282403 1862614 ~ 1870208 (-)
AMCG00008467 NA coding downstream 340917 1809871 ~ 1811694 (-)
AMCG00008482 NA coding upstream 3681 2169331 ~ 2172673 (-)
AMCG00008481 NA coding upstream 7186 2172836 ~ 2203443 (-)
AMCG00008480 NA coding upstream 42523 2208173 ~ 2212837 (-)
AMCG00008486 NA coding upstream 273059 2438709 ~ 2445212 (-)
AMCG00008488 NA coding upstream 324227 2489877 ~ 2535361 (-)
G49393 NA non-coding downstream 76963 2068083 ~ 2075648 (-)
G49394 NA non-coding downstream 81739 2069790 ~ 2070872 (-)
G49389 NA non-coding downstream 86316 2054515 ~ 2066295 (-)
G49346 NA non-coding downstream 413282 1738280 ~ 1739329 (-)
G49232 NA non-coding downstream 524246 1626287 ~ 1628365 (-)
G49414 NA non-coding upstream 70877 2236527 ~ 2236861 (-)
G49419 NA non-coding upstream 194210 2359860 ~ 2360112 (-)
G49462 NA non-coding upstream 211355 2377005 ~ 2436757 (-)
G49547 NA non-coding upstream 657591 2823241 ~ 2823976 (-)
G49606 NA non-coding upstream 744012 2909662 ~ 2910628 (-)
AMCG00008474 NA other downstream 67586 2073783 ~ 2085025 (-)
G49375 NA other downstream 271649 1879621 ~ 1880962 (-)
AMCG00008462 NA other downstream 293120 1798845 ~ 1859491 (-)
AMCG00008466 NA other downstream 312512 1819774 ~ 1840099 (-)
AMCG00008452 NA other downstream 497132 1629854 ~ 1655479 (-)
AMCG00008491 prkcsh,LOC102779661 other upstream 471265 2636915 ~ 2702422 (-)
G49605 NA other upstream 741025 2906675 ~ 2908665 (-)
AMCG00008554 NA other upstream 1265164 3430814 ~ 3871269 (-)
AMCG00008547 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058 other upstream 1604034 3769684 ~ 3777354 (-)
AMCG00008602 NA other upstream 3421425 5587075 ~ 5610329 (-)

Expression


Co-expression Network